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Expression Template: Les.193.3.S1_a_at

Template Basic Information

Template name:	Les.193.3.S1_a_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U586037
External db links:	GenBank: BI204849

Annotations for unigene SGN-U586037 (manual: 1 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLED-6-H1, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: RNA helicase Annotation Keywords: nucleic acid metabolism; RNA processing; RNA splicing; mRNA localization

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157356762\|emb\|CAO62964.1\|	699		77.28	1347 bp (72.3%)	3
Description:	unnamed
arabidopsis	blastx	At3G53110.1	577	1e-164	65.27	1359 bp (73.0%)	3
Description:	Symbols: LOS4 \| LOS4 (Low expression of osmotically responsive genes 1); ATP-dependent helicas&hellip
swissprot	blastx	Q93ZG7	577	1e-163	65.27	1359 bp (73.0%)	3
Description:	DEAD-box ATP-dependent RNA helicase 38 OS=Arabidopsis thaliana GN=RH38 PE=2 SV=2

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.193.3.S1_a_at:ProbePair0	PM	data not available	data not available	data not available
Les.193.3.S1_a_at:ProbePair1	PM	data not available	data not available	data not available
Les.193.3.S1_a_at:ProbePair10	PM	data not available	data not available	data not available
Les.193.3.S1_a_at:ProbePair2	PM	data not available	data not available	data not available
Les.193.3.S1_a_at:ProbePair3	PM	data not available	data not available	data not available
Les.193.3.S1_a_at:ProbePair4	PM	data not available	data not available	data not available
Les.193.3.S1_a_at:ProbePair5	PM	data not available	data not available	data not available
Les.193.3.S1_a_at:ProbePair6	PM	data not available	data not available	data not available
Les.193.3.S1_a_at:ProbePair7	PM	data not available	data not available	data not available
Les.193.3.S1_a_at:ProbePair8	PM	data not available	data not available	data not available
Les.193.3.S1_a_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	328.35	328.35	18.17	0.06
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	60.41	51.00	17.40	0.29
	Gene expression data from Aft red fruit flesh	endocarp	3	3	50.56	47.24	6.12	0.12
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	964.56	1018.09	196.21	0.20
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	875.28	875.28	41.69	0.05
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	34.81	35.54	2.05	0.06
	Gene expression data from Aft red fruit peel	exocarp	3	3	31.54	33.83	5.86	0.19
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	656.10	660.84	50.50	0.08
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	729.47	733.91	51.54	0.07
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	846.14	886.64	124.26	0.15
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	640.74	640.74	129.63	0.20
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	1022.21	1034.39	30.64	0.03
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	433.40	433.40	194.91	0.45
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	441.10	345.86	214.11	0.49
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	529.20	529.20	36.89	0.07
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	270.75	270.75	8.05	0.03
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	400.79	398.04	16.96	0.04
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	444.82	456.32	57.95	0.13
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	756.40	753.64	37.86	0.05
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	1642.92	1651.92	44.71	0.03
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	1102.44	1136.15	61.14	0.06
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	893.72	893.72	30.35	0.03
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	646.74	551.33	316.79	0.49
	Gene expression data from Micro-Tom root	root	3	3	674.32	686.42	43.37	0.06

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	341.195	2e-4	P
	GSM480171 extract 1	315.501	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	50.9974	2e-4	P
	GSM480201 extract 1	49.7465	2e-4	P
	GSM480202 extract 1	80.497	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	46.8271	7e-4	P
	GSM480205 extract 1	47.2433	2e-4	P
	GSM480203 extract 1	57.6235	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	1128.46	2e-4	P
	GSM480180 extract 1	1018.09	2e-4	P
	GSM480182 extract 1	747.142	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	904.758	2e-4	P
	GSM480186 extract 1	845.799	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	35.5443	2e-4	P
	GSM480206 extract 1	32.4899	2e-4	P
	GSM480207 extract 1	36.395	7e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	33.8315	0.002	P
	GSM480210 extract 1	24.8845	2e-4	P
	GSM480211 extract 1	35.9106	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	660.84	2e-4	P
	GSM480219 extract 1	603.396	2e-4	P
	GSM480220 extract 1	704.061	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	675.849	2e-4	P
	GSM480221 extract 1	778.65	2e-4	P
	GSM480222 extract 1	733.911	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	886.644	2e-4	P
	GSM480191 extract 1	945.083	2e-4	P
	GSM480192 extract 1	706.682	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	732.407	2e-4	P
	GSM480195 extract 1	549.078	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	1044.9	2e-4	P
	GSM480198 extract 1	1034.39	2e-4	P
	GSM480199 extract 1	987.354	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	295.579	2e-4	P
	GSM480194 extract 1	571.227	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	325.501	2e-4	P
	GSM480230 extract 1	366.217	2e-4	P
	GSM480228 extract 1	312.263	2e-4	P
	GSM480231 extract 1	760.414	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	555.283	2e-4	P
	GSM480169 extract 1	503.117	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	276.447	2e-4	P
	GSM480173 extract 1	265.061	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	385.368	2e-4	P
	GSM480174 extract 1	418.956	2e-4	P
	GSM480175 extract 1	398.041	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	496.164	2e-4	P
	GSM480178 extract 1	456.316	2e-4	P
	GSM480179 extract 1	381.982	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	720.008	2e-4	P
	GSM480212 extract 1	795.57	2e-4	P
	GSM480214 extract 1	753.635	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	1682.45	2e-4	P
	GSM480216 extract 1	1651.92	2e-4	P
	GSM480217 extract 1	1594.4	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	1139.3	2e-4	P
	GSM480187 extract 1	1136.15	2e-4	P
	GSM480188 extract 1	1031.87	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	915.186	2e-4	P
	GSM480184 extract 1	872.264	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	599.808	2e-4	P
	GSM480226 extract 1	502.861	2e-4	P
	GSM480225 extract 1	381.633	2e-4	P
	GSM480227 extract 1	1102.68	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	626.188	2e-4	P
	GSM480167 extract 1	710.354	2e-4	P
	GSM480165 extract 1	686.418	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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