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Expression Template: LesAffx.805.1.S1_at

Template Basic Information

Template name:	LesAffx.805.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U569510
External db links:	GenBank: BI203776

Annotations for unigene SGN-U569510 (manual: 1 | blast: 3 | go: 3 )

Manual annotations

Based on clone cLEX-13-L6, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: putative protein Annotation Keywords: other; putative protein

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147769615\|emb\|CAN72389.1\|	582	3e-164	84.1	1035 bp (64.5%)	2
Description:	hypothetical
arabidopsis	blastx	At3G62600.1	552	2e-157	82.72	963 bp (60.0%)	2
Description:	DNAJ heat shock family protein \| chr3:23162014-23164322 REVERSE
swissprot	blastx	Q6TUG0	305	5e-82	49.85	966 bp (60.2%)	2
Description:	DnaJ homolog subfamily B member 11 OS=Rattus norvegicus GN=Dnajb11 PE=2 SV=1

GO Terms Annotations

GO:0031072heat shock protein binding
GO:0051082unfolded protein binding
GO:0006457protein folding

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.805.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.805.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.805.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.805.1.S1_at:ProbePair9	PM	data not available	data not available	data not available
LesAffx.805.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.805.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.805.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.805.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.805.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.805.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.805.1.S1_at:ProbePair6	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	136.69	136.69	89.72	0.66
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	61.56	60.46	2.87	0.05
	Gene expression data from Aft red fruit flesh	endocarp	3	3	41.49	38.91	11.92	0.29
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	41.60	41.49	6.20	0.15
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	176.05	185.82	55.90	0.32
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	182.03	182.03	114.43	0.63
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	231.64	231.64	37.17	0.16
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	53.01	52.01	13.17	0.25
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	38.22	38.14	6.38	0.17
	Gene expression data from Aft red fruit peel	exocarp	3	3	53.40	54.10	3.38	0.06
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	31.96	31.11	2.75	0.09
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	21.14	19.70	3.23	0.15
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	267.58	216.68	130.11	0.49
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	99.08	99.08	71.35	0.72
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	137.63	137.24	5.86	0.04
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	226.40	226.40	44.88	0.20
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	81.38	82.91	16.71	0.21
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	101.72	101.72	37.21	0.37
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	113.86	113.86	18.15	0.16
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	159.24	157.57	40.60	0.25
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	145.92	134.63	27.59	0.19
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	36.72	35.05	9.43	0.26
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	216.92	183.29	70.90	0.33
	Gene expression data from Micro-Tom root	root	3	3	317.45	311.06	15.74	0.05

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	73.2507	2e-4	P
	GSM480170 extract 1	200.128	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	60.4553	2e-4	P
	GSM480200 extract 1	59.4043	2e-4	P
	GSM480202 extract 1	64.8219	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	31.0716	2e-4	P
	GSM480204 extract 1	38.9056	2e-4	P
	GSM480203 extract 1	54.489	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	41.4912	2e-4	P
	GSM480215 extract 1	35.4619	2e-4	P
	GSM480216 extract 1	47.8528	0.001	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	226.42	2e-4	P
	GSM480180 extract 1	115.908	2e-4	P
	GSM480182 extract 1	185.825	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	262.946	2e-4	P
	GSM480186 extract 1	101.122	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	205.363	2e-4	P
	GSM480183 extract 1	257.928	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	40.5878	7e-4	P
	GSM480225 extract 1	60.8412	2e-4	P
	GSM480226 extract 1	43.1711	2e-4	P
	GSM480227 extract 1	67.4216	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	31.8876	2e-4	P
	GSM480208 extract 1	44.6447	2e-4	P
	GSM480207 extract 1	38.1398	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	49.7233	2e-4	P
	GSM480209 extract 1	54.0981	2e-4	P
	GSM480211 extract 1	56.3745	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	35.037	2e-4	P
	GSM480220 extract 1	29.735	2e-4	P
	GSM480219 extract 1	31.112	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	18.8812	0.004	P
	GSM480222 extract 1	19.7013	0.003	P
	GSM480223 extract 1	24.8343	0.004	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	216.678	2e-4	P
	GSM480190 extract 1	170.612	2e-4	P
	GSM480191 extract 1	415.44	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	149.53	2e-4	P
	GSM480196 extract 1	48.6234	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	131.98	2e-4	P
	GSM480197 extract 1	143.678	2e-4	P
	GSM480198 extract 1	137.239	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	194.665	2e-4	P
	GSM480193 extract 1	258.132	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	78.4552	2e-4	P
	GSM480229 extract 1	59.9844	2e-4	P
	GSM480230 extract 1	99.6991	2e-4	P
	GSM480231 extract 1	87.365	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	75.4066	2e-4	P
	GSM480168 extract 1	128.027	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	101.03	2e-4	P
	GSM480173 extract 1	126.7	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	200.648	2e-4	P
	GSM480176 extract 1	119.503	2e-4	P
	GSM480175 extract 1	157.567	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	125.76	2e-4	P
	GSM480178 extract 1	134.626	2e-4	P
	GSM480179 extract 1	177.364	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	28.2402	2e-4	P
	GSM480213 extract 1	35.0519	2e-4	P
	GSM480214 extract 1	46.8781	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	298.376	2e-4	P
	GSM480189 extract 1	183.293	2e-4	P
	GSM480188 extract 1	169.102	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	311.061	2e-4	P
	GSM480166 extract 1	305.907	2e-4	P
	GSM480167 extract 1	335.37	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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