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Expression Template: LesAffx.11979.2.S1_at

Template Basic Information

Template name:	LesAffx.11979.2.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U582231
External db links:	GenBank: BI203983

Annotations for unigene SGN-U582231 (manual: 1 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLEC-6-A3, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: ferric-chelate reductase Annotation Keywords: other; enzyme; reductase

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157355652\|emb\|CAO49469.1\|	861		65.73	1998 bp (84.9%)	1
Description:	unnamed
arabidopsis	blastx	At5G23980.1	721		56.49	1998 bp (84.9%)	1
Description:	Symbols: ATFRO4, FRO4 \| ATFRO4/FRO4 (FERRIC REDUCTION OXIDASE 4); ferric-chelate reductase \| c&hellip
swissprot	blastx	Q9NRD8	94.4	3e-18	21.82	1029 bp (43.7%)	1
Description:	Dual oxidase 2 OS=Homo sapiens GN=DUOX2 PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.11979.2.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.11979.2.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.11979.2.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.11979.2.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.11979.2.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.11979.2.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.11979.2.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.11979.2.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.11979.2.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.11979.2.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.11979.2.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	13.10	13.10	16.70	1.27
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	8.24	10.32	3.86	0.47
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	15.48	15.30	13.24	0.86
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	4.17	5.20	3.39	0.81
	Gene expression data from Aft red fruit peel	exocarp	3	3	1.77	0.89	1.86	1.05
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	6.35	6.88	2.80	0.44
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	9.77	9.97	2.30	0.24
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	7.83	6.15	5.16	0.66
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	7.46	7.46	0.84	0.11
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	6.14	6.05	0.96	0.16
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	5.60	5.60	1.91	0.34
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	5.43	5.75	2.42	0.44
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	188.76	188.76	222.34	1.18
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	8.40	8.40	3.32	0.40
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	911.89	1049.74	246.31	0.27
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	3.70	3.65	0.38	0.10
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	2.71	2.82	1.09	0.40
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	5.19	6.27	2.84	0.55
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	3.55	1.36	3.84	1.08
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	8.91	10.81	5.66	0.64
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	4.09	4.09	1.97	0.48
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	3.62	3.71	0.70	0.19
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	8.16	8.16	2.48	0.30
	Gene expression data from Micro-Tom root	root	3	3	552.40	614.37	182.41	0.33

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	24.9053	0.002	P
	GSM480171 extract 1	1.29355	0.634	A
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	10.6157	0.030	P
	GSM480201 extract 1	10.3186	0.038	P
	GSM480202 extract 1	3.78994	0.366	A
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	9.2483	0.018	P
	GSM480225 extract 1	30.7083	0.011	P
	GSM480227 extract 1	0.622834	0.781	A
	GSM480226 extract 1	21.348	0.002	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	0.385527	0.944	A
	GSM480208 extract 1	6.92517	0.081	A
	GSM480207 extract 1	5.20314	0.366	A
Gene expression data from Aft red fruit peel	GSM480210 extract 1	0.525636	0.696	A
	GSM480209 extract 1	0.885766	0.634	A
	GSM480211 extract 1	3.91179	0.334	A
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	3.32027	0.274	A
	GSM480218 extract 1	8.84987	0.219	A
	GSM480220 extract 1	6.87673	0.239	A
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	7.3694	0.150	A
	GSM480223 extract 1	11.9644	0.056	M
	GSM480222 extract 1	9.96541	0.056	M
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	6.15281	0.366	A
	GSM480192 extract 1	13.6194	0.056	M
	GSM480191 extract 1	3.70452	0.399	A
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	8.05579	0.171	A
	GSM480195 extract 1	6.86669	0.171	A
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	6.0453	0.171	A
	GSM480198 extract 1	5.22022	0.219	A
	GSM480199 extract 1	7.14039	0.246	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	4.24428	0.334	A
	GSM480193 extract 1	6.94721	0.145	A
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	8.00665	0.274	A
	GSM480228 extract 1	5.2845	0.601	A
	GSM480230 extract 1	6.21102	0.432	A
	GSM480231 extract 1	2.22767	0.274	A
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	345.978	2e-4	P
	GSM480169 extract 1	31.535	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	10.7536	0.004	P
	GSM480173 extract 1	6.05608	0.068	A
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	1058.41	2e-4	P
	GSM480175 extract 1	1049.74	2e-4	P
	GSM480176 extract 1	627.511	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	3.34468	0.500	A
	GSM480177 extract 1	4.10839	0.534	A
	GSM480179 extract 1	3.6454	0.366	A
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	3.74068	0.219	A
	GSM480203 extract 1	1.575	0.634	A
	GSM480205 extract 1	2.81694	0.500	A
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	1.96968	0.500	A
	GSM480213 extract 1	6.26955	0.038	P
	GSM480214 extract 1	7.32545	0.081	A
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	1.32255	0.634	A
	GSM480215 extract 1	7.98372	0.024	P
	GSM480217 extract 1	1.35696	0.726	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	13.3857	0.068	A
	GSM480180 extract 1	10.8075	0.019	P
	GSM480182 extract 1	2.54821	0.534	A
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	2.69461	0.366	A
	GSM480186 extract 1	5.48466	0.246	A
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	2.88238	0.568	A
	GSM480188 extract 1	4.27873	0.112	A
	GSM480189 extract 1	3.71077	0.500	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	6.40211	0.095	A
	GSM480184 extract 1	9.90886	0.014	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	347.087	2e-4	P
	GSM480166 extract 1	695.754	2e-4	P
	GSM480167 extract 1	614.367	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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