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Expression Template: LesAffx.66757.1.S1_at

Template Basic Information

Template name:	LesAffx.66757.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U562749
External db links:	GenBank: BG135318

Annotations for unigene SGN-U562749 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|118483404\|gb\|ABK93602.1\|	165	1e-39	94.32	264 bp (47.3%)	3
Description:	unknown
arabidopsis	blastx	At2G18740.1	162	1e-40	92.05	264 bp (47.3%)	3
Description:	small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative \| chr&hellip
swissprot	blastx	A1XQR9	127	5e-29	72.84	243 bp (43.5%)	3
Description:	Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.66757.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.66757.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.66757.1.S1_at:ProbePair9	PM	data not available	data not available	data not available
LesAffx.66757.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.66757.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.66757.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.66757.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.66757.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.66757.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.66757.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.66757.1.S1_at:ProbePair6	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	323.54	323.54	123.50	0.38
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	150.41	156.59	11.00	0.07
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	127.43	127.43	62.88	0.49
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	139.96	143.06	6.86	0.05
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	231.28	231.97	39.60	0.17
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	163.46	158.92	8.60	0.05
	Gene expression data from Aft red fruit peel	exocarp	3	3	258.90	277.22	38.59	0.15
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	144.84	140.83	11.49	0.08
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	174.61	187.52	26.85	0.15
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	297.88	324.32	84.43	0.28
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	136.16	136.16	25.56	0.19
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	142.81	154.94	21.98	0.15
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	135.06	135.06	0.58	0.00
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	162.62	157.31	40.08	0.25
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	375.30	375.30	25.68	0.07
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	337.19	337.19	9.60	0.03
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	408.64	390.46	47.80	0.12
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	424.70	442.79	43.28	0.10
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	137.45	138.52	14.75	0.11
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	228.48	212.66	28.81	0.13
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	144.19	145.24	11.72	0.08
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	254.73	261.95	85.20	0.33
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	132.81	132.81	51.89	0.39
	Gene expression data from Micro-Tom root	root	3	3	402.99	388.80	28.50	0.07

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	410.871	2e-4	P
	GSM480171 extract 1	236.214	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	156.589	2e-4	P
	GSM480214 extract 1	156.931	2e-4	P
	GSM480212 extract 1	137.704	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	171.893	2e-4	P
	GSM480185 extract 1	82.9635	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	132.098	2e-4	P
	GSM480187 extract 1	144.71	2e-4	P
	GSM480189 extract 1	143.062	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	243.403	2e-4	P
	GSM480224 extract 1	220.542	2e-4	P
	GSM480226 extract 1	277.712	2e-4	P
	GSM480227 extract 1	183.474	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	158.921	2e-4	P
	GSM480207 extract 1	158.069	2e-4	P
	GSM480206 extract 1	173.38	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	214.564	2e-4	P
	GSM480211 extract 1	277.223	2e-4	P
	GSM480210 extract 1	284.926	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	140.828	2e-4	P
	GSM480219 extract 1	157.793	2e-4	P
	GSM480220 extract 1	135.886	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	192.571	2e-4	P
	GSM480221 extract 1	143.751	2e-4	P
	GSM480223 extract 1	187.521	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	324.324	2e-4	P
	GSM480190 extract 1	203.393	2e-4	P
	GSM480192 extract 1	365.932	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	118.083	2e-4	P
	GSM480196 extract 1	154.228	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	117.433	2e-4	P
	GSM480198 extract 1	154.935	2e-4	P
	GSM480199 extract 1	156.05	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	135.473	7e-4	P
	GSM480194 extract 1	134.652	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	216.296	2e-4	P
	GSM480229 extract 1	160.934	2e-4	P
	GSM480230 extract 1	153.692	2e-4	P
	GSM480231 extract 1	119.547	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	357.142	2e-4	P
	GSM480168 extract 1	393.462	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	343.981	2e-4	P
	GSM480173 extract 1	330.404	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	390.455	2e-4	P
	GSM480174 extract 1	372.605	2e-4	P
	GSM480175 extract 1	462.864	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	455.997	2e-4	P
	GSM480177 extract 1	375.303	2e-4	P
	GSM480178 extract 1	442.792	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	122.194	7e-4	P
	GSM480202 extract 1	138.521	2e-4	P
	GSM480201 extract 1	151.638	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	261.73	2e-4	P
	GSM480205 extract 1	211.051	2e-4	P
	GSM480204 extract 1	212.662	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	155.35	2e-4	P
	GSM480216 extract 1	145.239	2e-4	P
	GSM480217 extract 1	131.982	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	166.153	2e-4	P
	GSM480182 extract 1	336.088	2e-4	P
	GSM480181 extract 1	261.953	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	169.506	2e-4	P
	GSM480183 extract 1	96.1218	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	435.802	2e-4	P
	GSM480166 extract 1	384.371	2e-4	P
	GSM480165 extract 1	388.798	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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