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Expression Template: LesAffx.69216.1.S1_at

Template Basic Information

Template name:	LesAffx.69216.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U584325
External db links:	GenBank: AW647930

Annotations for unigene SGN-U584325 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|10334991\|gb\|AAG15839.2\|AF055910_1	529	2e-148	85.16	927 bp (72.2%)	2
Description:	NADPH-dependent mannose 6-phosphate reductase [Phelipanche ramosa]
arabidopsis	blastx	At2G21250.1	526	1e-149	84.14	927 bp (72.2%)	2
Description:	mannose 6-phosphate reductase (NADPH-dependent), putative \| chr2:9110489-9112197 REVERSE
swissprot	blastx	P28475	449	1e-125	71.01	921 bp (71.7%)	2
Description:	NADP-dependent D-sorbitol-6-phosphate dehydrogenase OS=Malus domestica GN=S6PDH PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.69216.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.69216.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.69216.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.69216.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.69216.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.69216.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.69216.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.69216.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.69216.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.69216.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.69216.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	248.19	248.19	2.75	0.01
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	681.29	664.87	48.96	0.07
	Gene expression data from Aft red fruit flesh	endocarp	3	3	743.45	757.71	36.26	0.05
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	730.33	730.33	102.04	0.14
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	429.87	382.43	184.75	0.43
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	510.76	508.93	55.26	0.11
	Gene expression data from Aft red fruit peel	exocarp	3	3	512.17	514.65	8.91	0.02
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	570.87	584.08	36.28	0.06
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	417.67	402.85	32.23	0.08
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	479.37	517.32	92.09	0.19
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	578.77	578.77	26.17	0.05
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	518.36	539.02	40.57	0.08
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	576.48	576.48	28.37	0.05
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	408.92	325.46	184.08	0.45
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	239.47	239.47	46.93	0.20
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	174.16	174.16	21.27	0.12
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	214.18	214.14	16.34	0.08
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	205.93	201.83	17.95	0.09
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	645.96	643.60	34.84	0.05
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	865.78	883.99	42.71	0.05
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	562.07	556.18	48.13	0.09
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	575.82	575.09	90.09	0.16
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	691.40	691.40	1.88	0.00
	Gene expression data from Micro-Tom root	root	3	3	364.64	354.58	22.28	0.06

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	250.133	2e-4	P
	GSM480170 extract 1	246.238	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	664.869	2e-4	P
	GSM480202 extract 1	642.644	2e-4	P
	GSM480201 extract 1	736.35	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	757.708	2e-4	P
	GSM480203 extract 1	702.225	2e-4	P
	GSM480205 extract 1	770.42	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	658.184	2e-4	P
	GSM480186 extract 1	802.484	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	262.145	2e-4	P
	GSM480224 extract 1	362.397	2e-4	P
	GSM480226 extract 1	402.469	2e-4	P
	GSM480227 extract 1	692.481	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	566.915	2e-4	P
	GSM480206 extract 1	456.448	2e-4	P
	GSM480208 extract 1	508.932	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	514.646	2e-4	P
	GSM480211 extract 1	519.574	2e-4	P
	GSM480210 extract 1	502.282	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	598.702	2e-4	P
	GSM480219 extract 1	529.835	2e-4	P
	GSM480220 extract 1	584.084	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	395.513	2e-4	P
	GSM480221 extract 1	454.646	2e-4	P
	GSM480223 extract 1	402.847	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	517.322	2e-4	P
	GSM480191 extract 1	546.416	2e-4	P
	GSM480192 extract 1	374.373	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	560.264	2e-4	P
	GSM480195 extract 1	597.269	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	471.617	2e-4	P
	GSM480197 extract 1	544.437	2e-4	P
	GSM480199 extract 1	539.023	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	596.546	2e-4	P
	GSM480194 extract 1	556.422	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	301.246	2e-4	P
	GSM480229 extract 1	306.329	2e-4	P
	GSM480230 extract 1	344.59	2e-4	P
	GSM480231 extract 1	683.517	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	272.649	2e-4	P
	GSM480169 extract 1	206.286	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	189.205	2e-4	P
	GSM480172 extract 1	159.124	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	214.138	2e-4	P
	GSM480175 extract 1	230.539	2e-4	P
	GSM480176 extract 1	197.868	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	190.378	2e-4	P
	GSM480178 extract 1	201.83	2e-4	P
	GSM480179 extract 1	225.574	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	681.92	2e-4	P
	GSM480212 extract 1	643.598	2e-4	P
	GSM480214 extract 1	612.359	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	816.978	2e-4	P
	GSM480217 extract 1	896.37	2e-4	P
	GSM480215 extract 1	883.993	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	517.157	2e-4	P
	GSM480180 extract 1	556.178	2e-4	P
	GSM480181 extract 1	612.881	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	666.278	2e-4	P
	GSM480188 extract 1	486.101	2e-4	P
	GSM480189 extract 1	575.088	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	690.067	2e-4	P
	GSM480184 extract 1	692.732	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	349.175	2e-4	P
	GSM480165 extract 1	390.176	2e-4	P
	GSM480167 extract 1	354.576	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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