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Expression Template: Les.405.1.S1_at

Template Basic Information

Template name:	Les.405.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U580302
External db links:	GenBank: BG643554

Annotations for unigene SGN-U580302 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157360515\|emb\|CAO70078.1\|	115	3e-24	90.16	183 bp (24.3%)	2
Description:	unnamed
arabidopsis	blastx	At1G27435.1	104	6e-23	69.33	210 bp (27.9%)	2
Description:	similar to Os12g0477600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066758.1) \| chr1:95&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.405.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.405.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.405.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.405.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.405.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.405.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.405.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.405.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.405.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.405.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.405.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	457.31	457.31	48.45	0.11
	Gene expression data from Aft red fruit flesh	endocarp	3	3	450.20	446.04	9.53	0.02
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	255.04	250.74	12.53	0.05
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	284.90	281.93	13.17	0.05
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	314.53	302.18	156.61	0.50
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	356.61	356.61	174.60	0.49
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	366.10	401.41	62.79	0.17
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	443.09	444.74	41.01	0.09
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	324.69	307.64	43.62	0.13
	Gene expression data from Aft red fruit peel	exocarp	3	3	525.68	524.86	15.20	0.03
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	317.30	314.44	7.65	0.02
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	425.40	428.20	8.88	0.02
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	609.24	652.26	220.92	0.36
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	620.83	620.83	281.39	0.45
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	654.44	726.66	128.27	0.20
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	684.40	684.40	177.78	0.26
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	557.11	595.41	96.36	0.17
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	479.96	479.96	103.04	0.21
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	421.09	421.09	1.16	0.00
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	530.15	557.99	79.53	0.15
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	461.73	452.53	67.07	0.15
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	250.96	251.35	21.95	0.09
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	372.13	372.13	193.73	0.52
	Gene expression data from Micro-Tom root	root	3	3	560.39	587.29	56.44	0.10

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	423.043	7e-4	P
	GSM480171 extract 1	491.568	7e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	443.462	2e-4	P
	GSM480203 extract 1	461.11	2e-4	P
	GSM480205 extract 1	446.038	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	250.74	2e-4	P
	GSM480212 extract 1	245.225	2e-4	P
	GSM480214 extract 1	269.151	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	299.299	2e-4	P
	GSM480217 extract 1	273.457	2e-4	P
	GSM480215 extract 1	281.931	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	164.461	2e-4	P
	GSM480181 extract 1	302.184	2e-4	P
	GSM480182 extract 1	476.95	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	480.075	2e-4	P
	GSM480185 extract 1	233.149	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	403.281	2e-4	P
	GSM480187 extract 1	293.595	2e-4	P
	GSM480189 extract 1	401.409	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480227 extract 1	392.144	2e-4	P
	GSM480225 extract 1	435.395	2e-4	P
	GSM480226 extract 1	454.082	2e-4	P
	GSM480224 extract 1	490.729	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	292.183	2e-4	P
	GSM480207 extract 1	307.636	2e-4	P
	GSM480208 extract 1	374.26	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	524.86	2e-4	P
	GSM480209 extract 1	510.911	2e-4	P
	GSM480211 extract 1	541.274	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	325.977	2e-4	P
	GSM480219 extract 1	311.494	2e-4	P
	GSM480220 extract 1	314.444	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	428.205	2e-4	P
	GSM480221 extract 1	415.464	2e-4	P
	GSM480223 extract 1	432.545	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	369.978	2e-4	P
	GSM480192 extract 1	805.494	2e-4	P
	GSM480191 extract 1	652.257	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	819.805	2e-4	P
	GSM480195 extract 1	421.856	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	506.343	2e-4	P
	GSM480198 extract 1	730.309	2e-4	P
	GSM480199 extract 1	726.657	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	558.689	2e-4	P
	GSM480194 extract 1	810.105	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	602.298	2e-4	P
	GSM480228 extract 1	588.516	2e-4	P
	GSM480230 extract 1	623.433	2e-4	P
	GSM480231 extract 1	414.175	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	407.097	7e-4	P
	GSM480169 extract 1	552.816	7e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	420.27	7e-4	P
	GSM480172 extract 1	421.907	7e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	440.447	7e-4	P
	GSM480174 extract 1	557.986	7e-4	P
	GSM480175 extract 1	592.02	7e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	532.93	2e-4	P
	GSM480177 extract 1	399.74	2e-4	P
	GSM480178 extract 1	452.527	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	272.715	2e-4	P
	GSM480202 extract 1	228.818	2e-4	P
	GSM480201 extract 1	251.348	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	235.139	2e-4	P
	GSM480184 extract 1	509.121	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	495.53	2e-4	P
	GSM480166 extract 1	598.356	2e-4	P
	GSM480167 extract 1	587.287	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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