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Expression Template: LesAffx.46503.1.S1_at

Template Basic Information

Template name:	LesAffx.46503.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U585149
External db links:	GenBank: BG643520

Annotations for unigene SGN-U585149 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147841991\|emb\|CAN60933.1\|	234	6e-60	78.21	468 bp (67.3%)	1
Description:	hypothetical protein [Vitis vinifera]
arabidopsis	blastx	At5G03170.1	215	2e-56	72.44	468 bp (67.3%)	1
Description:	Symbols: FLA11 \| FLA11 (fasciclin-like arabinogalactan-protein 11) \| chr5:752897-753637 REVERSE
swissprot	blastx	Q8LEJ6	215	2e-55	72.44	468 bp (67.3%)	1
Description:	Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana GN=FLA11 PE=2 SV=2

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.46503.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.46503.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.46503.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.46503.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.46503.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.46503.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.46503.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.46503.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.46503.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.46503.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.46503.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	11.70	11.70	0.84	0.07
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	1.19	0.45	1.44	1.21
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	2.90	2.99	2.52	0.87
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	0.34	0.34	0.12	0.35
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	1.57	0.89	1.80	1.14
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	2.20	0.36	3.47	1.58
	Gene expression data from Aft red fruit peel	exocarp	3	3	1.24	0.23	1.90	1.53
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1.84	0.89	1.66	0.90
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	2.55	2.08	2.42	0.95
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	1.18	0.50	1.35	1.15
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	0.34	0.34	0.39	1.13
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	0.24	0.23	0.08	0.33
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	0.21	0.21	0.21	0.99
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	1.89	1.95	1.82	0.96
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	30.17	30.17	1.44	0.05
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	11.02	11.02	0.89	0.08
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	11.38	12.87	4.90	0.43
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	18.49	16.98	3.11	0.17
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	1.93	1.04	2.19	1.13
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	1.34	1.73	1.08	0.80
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	0.41	0.41	0.38	0.93
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	1.36	1.36	1.60	1.18
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	1.66	1.28	1.52	0.92
	Gene expression data from Micro-Tom root	root	3	3	36.66	33.24	8.59	0.23

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	12.2909	7e-4	P
	GSM480171 extract 1	11.1001	0.003	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	2.85412	0.304	A
	GSM480214 extract 1	0.450373	0.625	A
	GSM480212 extract 1	0.270041	0.666	A
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	5.37752	0.171	A
	GSM480215 extract 1	2.98691	0.068	A
	GSM480217 extract 1	0.345444	0.888	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	0.344981	0.601	A
	GSM480182 extract 1	0.217853	0.754	A
	GSM480181 extract 1	0.455161	0.754	A
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	3.60992	0.399	A
	GSM480188 extract 1	0.209233	0.800	A
	GSM480189 extract 1	0.894874	0.747	A
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	0.0328723	0.932	A
	GSM480207 extract 1	6.19729	0.081	A
	GSM480208 extract 1	0.35995	0.823	A
Gene expression data from Aft red fruit peel	GSM480210 extract 1	0.0559017	0.888	A
	GSM480209 extract 1	0.228779	0.754	A
	GSM480211 extract 1	3.42519	0.150	A
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	3.75687	0.195	A
	GSM480218 extract 1	0.888942	0.726	A
	GSM480219 extract 1	0.880202	0.423	A
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	5.16655	0.112	A
	GSM480221 extract 1	2.08312	0.466	A
	GSM480223 extract 1	0.400589	0.870	A
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	0.30065	0.960	A
	GSM480191 extract 1	0.497566	0.601	A
	GSM480192 extract 1	2.73196	0.466	A
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	0.0696035	0.970	A
	GSM480196 extract 1	0.619591	0.916	A
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	0.165709	0.781	A
	GSM480197 extract 1	0.319182	0.870	A
	GSM480199 extract 1	0.226875	0.666	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	0.354004	0.568	A
	GSM480194 extract 1	0.0624567	0.905	A
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	0.15914	0.919	A
	GSM480231 extract 1	3.40268	0.246	A
	GSM480229 extract 1	0.489807	0.850	A
	GSM480230 extract 1	3.52368	0.304	A
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	29.1515	2e-4	P
	GSM480169 extract 1	31.1886	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	11.6522	0.004	P
	GSM480173 extract 1	10.3919	0.002	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	12.8699	0.001	P
	GSM480174 extract 1	5.91101	0.219	A
	GSM480175 extract 1	15.3736	0.004	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	16.9803	2e-4	P
	GSM480177 extract 1	16.4146	7e-4	P
	GSM480178 extract 1	22.0703	0.019	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	4.42896	0.366	A
	GSM480201 extract 1	0.326797	0.888	A
	GSM480202 extract 1	1.04262	0.304	A
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	0.126176	0.850	A
	GSM480204 extract 1	2.1703	0.601	A
	GSM480205 extract 1	1.72765	0.568	A
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	0.681306	0.568	A
	GSM480186 extract 1	0.139654	0.969	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	2.49175	0.432	A
	GSM480184 extract 1	0.230023	0.888	A
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	1.82298	0.666	A
	GSM480224 extract 1	0.324163	0.850	A
	GSM480226 extract 1	3.72888	0.095	A
	GSM480227 extract 1	0.744555	0.432	A
Gene expression data from Micro-Tom root	GSM480165 extract 1	33.2423	2e-4	P
	GSM480166 extract 1	30.3084	2e-4	P
	GSM480167 extract 1	46.4353	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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