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Expression Template: LesAffx.64583.1.S1_at

Template Basic Information

Template name:	LesAffx.64583.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U565833
External db links:	GenBank: BM409701

Annotations for unigene SGN-U565833 (manual: 0 | blast: 3 | go: 4 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157338873\|emb\|CAO42224.1\|	417	8e-115	63.37	909 bp (83.5%)	2
Description:	unnamed
arabidopsis	blastx	At1G15170.1	380	1e-105	58.67	900 bp (82.6%)	2
Description:	MATE efflux family protein \| chr1:5220685-5222751 FORWARD
swissprot	blastx	Q9LYT3	213	2e-54	37	900 bp (82.6%)	2
Description:	Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1

GO Terms Annotations

GO:0015238drug transporter activity
GO:0016020membrane
GO:0006855multidrug transport
GO:0015297antiporter activity

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.64583.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.64583.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.64583.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.64583.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.64583.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.64583.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.64583.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.64583.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.64583.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.64583.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.64583.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	158.07	158.07	19.47	0.12
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	39.27	34.50	10.33	0.26
	Gene expression data from Aft red fruit flesh	endocarp	3	3	42.18	40.56	3.17	0.08
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	54.38	54.10	10.41	0.19
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	250.13	236.93	79.38	0.32
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	266.38	277.32	32.71	0.12
	Gene expression data from Aft red fruit peel	exocarp	3	3	347.58	350.74	51.43	0.15
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	276.05	238.76	64.73	0.23
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	191.77	181.38	39.66	0.21
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	963.48	766.51	556.78	0.58
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	571.53	571.53	387.86	0.68
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	785.44	768.25	33.19	0.04
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	410.94	410.94	44.54	0.11
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	166.14	150.57	46.30	0.28
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	164.05	164.05	8.45	0.05
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	17.59	17.59	2.96	0.17
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	78.49	56.35	45.72	0.58
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	114.39	117.44	12.08	0.11
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	34.30	33.99	8.97	0.26
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	343.20	343.20	367.11	1.07
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	173.20	165.76	29.86	0.17
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	87.16	87.16	52.39	0.60
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	63.89	74.14	23.64	0.37
	Gene expression data from Micro-Tom root	root	3	3	195.05	184.06	38.32	0.20

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	144.306	0.001	P
	GSM480171 extract 1	171.841	7e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	34.4952	0.014	P
	GSM480200 extract 1	51.122	0.014	P
	GSM480201 extract 1	32.1986	0.024	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	40.1487	0.014	P
	GSM480204 extract 1	40.5635	0.024	P
	GSM480205 extract 1	45.8318	0.019	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	44.1047	0.014	P
	GSM480212 extract 1	54.1049	0.006	P
	GSM480214 extract 1	64.9227	0.002	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	178.175	0.001	P
	GSM480181 extract 1	236.927	7e-4	P
	GSM480182 extract 1	335.285	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	229.603	7e-4	P
	GSM480207 extract 1	277.323	7e-4	P
	GSM480208 extract 1	292.23	7e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	350.741	7e-4	P
	GSM480210 extract 1	294.646	7e-4	P
	GSM480211 extract 1	397.366	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	238.765	7e-4	P
	GSM480219 extract 1	350.801	7e-4	P
	GSM480220 extract 1	238.596	0.001	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	181.378	7e-4	P
	GSM480221 extract 1	158.353	7e-4	P
	GSM480222 extract 1	235.592	7e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	766.514	2e-4	P
	GSM480190 extract 1	1591.97	2e-4	P
	GSM480192 extract 1	531.955	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	845.791	2e-4	P
	GSM480196 extract 1	297.268	7e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	823.7	2e-4	P
	GSM480199 extract 1	764.367	2e-4	P
	GSM480198 extract 1	768.254	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	379.439	7e-4	P
	GSM480194 extract 1	442.431	7e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480231 extract 1	231.047	0.001	P
	GSM480228 extract 1	133.386	0.001	P
	GSM480229 extract 1	132.345	0.001	P
	GSM480230 extract 1	167.761	0.001	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	170.02	7e-4	P
	GSM480169 extract 1	158.072	7e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	19.6822	0.030	P
	GSM480172 extract 1	15.4992	0.046	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	131.06	7e-4	P
	GSM480174 extract 1	48.0529	0.003	P
	GSM480175 extract 1	56.3494	0.006	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	124.663	7e-4	P
	GSM480179 extract 1	101.078	7e-4	P
	GSM480178 extract 1	117.442	7e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	33.9936	0.046	P
	GSM480215 extract 1	43.4132	0.003	P
	GSM480217 extract 1	25.4889	0.030	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	602.787	2e-4	P
	GSM480186 extract 1	83.6172	0.004	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	206.066	7e-4	P
	GSM480187 extract 1	165.762	7e-4	P
	GSM480189 extract 1	147.757	0.001	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	50.1077	0.014	P
	GSM480184 extract 1	124.203	0.002	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	78.6441	0.006	P
	GSM480224 extract 1	75.7595	0.006	P
	GSM480226 extract 1	72.512	0.002	P
	GSM480227 extract 1	28.6281	0.019	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	184.059	2e-4	P
	GSM480165 extract 1	237.668	7e-4	P
	GSM480167 extract 1	163.424	7e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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