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Expression Template: LesAffx.55216.1.S1_at

Template Basic Information

Template name:	LesAffx.55216.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U585719
External db links:	GenBank: BM535222

Annotations for unigene SGN-U585719 (manual: 1 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLEF-42-F3, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "permease, AUX1-like" Annotation Keywords: transport; membrane transport; membrane protein; permease; solute transport\

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|126217798\|gb\|ABN81352.1\|	409	1e-112	87.97	723 bp (92.3%)	3
Description:	auxin influx transport protein [Casuarina glauca]
arabidopsis	blastx	At1G77690.1	400	4e-112	88.33	720 bp (92.0%)	3
Description:	amino acid permease, putative \| chr1:29206126-29208211 REVERSE
swissprot	blastx	Q9FEL6	404	3e-112	86.31	723 bp (92.3%)	3
Description:	Auxin transporter-like protein 3 OS=Medicago truncatula GN=LAX3 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.55216.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.55216.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.55216.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.55216.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.55216.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.55216.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.55216.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.55216.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.55216.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.55216.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.55216.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	398.36	398.36	15.75	0.04
	Gene expression data from Aft red fruit flesh	endocarp	3	3	153.84	153.79	12.56	0.08
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	246.19	243.60	59.29	0.24
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	52.42	54.36	3.89	0.07
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	254.77	254.77	72.55	0.28
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	122.07	139.93	33.08	0.27
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	137.45	127.01	43.80	0.32
	Gene expression data from Aft red fruit peel	exocarp	3	3	16.81	17.07	1.38	0.08
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	110.01	113.74	17.67	0.16
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	20.30	18.92	4.26	0.21
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	267.67	292.35	112.29	0.42
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	36.14	36.14	5.38	0.15
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	117.54	108.04	16.67	0.14
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	123.59	123.59	37.40	0.30
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	26.56	21.71	22.59	0.85
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	455.26	455.26	48.34	0.11
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	125.06	125.06	5.82	0.05
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	148.45	165.59	35.73	0.24
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	161.65	176.35	42.54	0.26
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	224.62	183.91	70.73	0.31
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	512.72	556.72	81.50	0.16
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	454.46	454.46	57.56	0.13
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	149.98	79.57	161.52	1.08
	Gene expression data from Micro-Tom root	root	3	3	167.80	167.37	4.06	0.02

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	409.497	2e-4	P
	GSM480171 extract 1	387.219	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	153.793	2e-4	P
	GSM480204 extract 1	166.432	2e-4	P
	GSM480203 extract 1	141.306	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	243.604	2e-4	P
	GSM480213 extract 1	306.737	2e-4	P
	GSM480214 extract 1	188.232	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	54.9602	2e-4	P
	GSM480216 extract 1	47.9338	7e-4	P
	GSM480217 extract 1	54.3559	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	306.069	2e-4	P
	GSM480186 extract 1	203.467	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	139.93	2e-4	P
	GSM480187 extract 1	83.8926	2e-4	P
	GSM480188 extract 1	142.374	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	127.013	2e-4	P
	GSM480206 extract 1	99.8162	2e-4	P
	GSM480208 extract 1	185.525	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	18.0397	0.002	P
	GSM480209 extract 1	15.321	0.003	P
	GSM480211 extract 1	17.0685	7e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	125.516	2e-4	P
	GSM480220 extract 1	90.7719	2e-4	P
	GSM480218 extract 1	113.737	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	25.0762	0.002	P
	GSM480223 extract 1	16.908	0.003	P
	GSM480222 extract 1	18.9198	0.008	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	292.346	2e-4	P
	GSM480191 extract 1	365.574	2e-4	P
	GSM480192 extract 1	145.089	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	32.3337	0.004	P
	GSM480196 extract 1	39.9492	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	108.035	2e-4	P
	GSM480197 extract 1	136.789	2e-4	P
	GSM480199 extract 1	107.784	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	97.1453	2e-4	P
	GSM480194 extract 1	150.033	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	19.4669	0.004	P
	GSM480228 extract 1	23.9535	0.011	P
	GSM480229 extract 1	4.70782	0.399	A
	GSM480231 extract 1	58.1198	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	489.443	2e-4	P
	GSM480169 extract 1	421.08	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	129.179	2e-4	P
	GSM480172 extract 1	120.952	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	107.374	2e-4	P
	GSM480174 extract 1	165.591	2e-4	P
	GSM480175 extract 1	172.372	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	194.893	2e-4	P
	GSM480178 extract 1	176.347	2e-4	P
	GSM480179 extract 1	113.712	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	306.284	2e-4	P
	GSM480201 extract 1	183.649	2e-4	P
	GSM480202 extract 1	183.914	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	418.677	2e-4	P
	GSM480181 extract 1	562.772	2e-4	P
	GSM480182 extract 1	556.719	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	495.167	2e-4	P
	GSM480183 extract 1	413.76	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480227 extract 1	390.801	2e-4	P
	GSM480224 extract 1	49.9549	0.001	P
	GSM480225 extract 1	66.2949	2e-4	P
	GSM480226 extract 1	92.8496	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	172.065	2e-4	P
	GSM480165 extract 1	167.371	2e-4	P
	GSM480166 extract 1	163.98	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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