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Expression Template: LesAffx.68547.1.S1_at

Template Basic Information

Template name:	LesAffx.68547.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U574843
External db links:	GenBank: AW442497

Annotations for unigene SGN-U574843 (manual: 1 | blast: 3 | go: 0 )

Manual annotations

Based on clone cTOD-10-E6, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: glutaredoxin Annotation Keywords: other; oxygen and radical metabolism; antioxidant metabolism; glutathione metabolism; fruit quality

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|156891141\|gb\|ABU96708.1\|	203	2e-50	97.03	303 bp (29.0%)	2
Description:	glutaredoxin [Solanum tuberosum]
arabidopsis	blastx	At2G47880.1	149	3e-36	70.83	288 bp (27.5%)	2
Description:	glutaredoxin family protein \| chr2:19612194-19612502 FORWARD
swissprot	blastx	O82255	149	3e-35	70.83	288 bp (27.5%)	2
Description:	Glutaredoxin-C13 OS=Arabidopsis thaliana GN=GRXC13 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.68547.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.68547.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.68547.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.68547.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.68547.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.68547.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.68547.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.68547.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.68547.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.68547.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.68547.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	293.62	293.62	75.82	0.26
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	95.33	81.31	46.18	0.48
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	11.56	10.77	3.72	0.32
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	815.70	815.70	271.32	0.33
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	83.90	45.85	88.81	1.06
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	161.14	175.86	57.23	0.36
	Gene expression data from Aft red fruit peel	exocarp	3	3	13.42	12.07	4.61	0.34
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	14.01	15.83	3.26	0.23
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	5.79	4.51	5.51	0.95
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	13.77	12.91	6.03	0.44
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	5.09	5.09	2.86	0.56
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	28.54	15.07	24.56	0.86
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	20.34	20.34	14.58	0.72
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	7.38	6.93	6.17	0.84
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	158.50	158.50	53.24	0.34
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	1341.31	1341.31	188.83	0.14
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	2439.15	2793.23	678.47	0.28
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	2031.81	2046.18	354.84	0.17
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	657.63	555.42	184.81	0.28
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	465.63	467.32	89.80	0.19
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	350.29	393.75	114.86	0.33
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	959.86	874.78	197.68	0.21
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	414.40	414.40	122.80	0.30
	Gene expression data from Micro-Tom root	root	3	3	230.72	229.64	9.91	0.04

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	240.008	0.014	P
	GSM480171 extract 1	347.229	0.019	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	57.7965	2e-4	P
	GSM480213 extract 1	81.3066	2e-4	P
	GSM480214 extract 1	146.896	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	15.6045	7e-4	P
	GSM480217 extract 1	10.7733	2e-4	P
	GSM480216 extract 1	8.2895	0.019	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	1007.55	2e-4	P
	GSM480186 extract 1	623.839	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	27.4486	0.004	P
	GSM480226 extract 1	47.9622	0.001	P
	GSM480225 extract 1	43.7358	2e-4	P
	GSM480227 extract 1	216.455	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	209.572	2e-4	P
	GSM480207 extract 1	97.98	2e-4	P
	GSM480206 extract 1	175.857	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	12.0663	0.038	P
	GSM480210 extract 1	18.5597	7e-4	P
	GSM480211 extract 1	9.64319	0.003	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	15.8327	0.006	P
	GSM480219 extract 1	10.2534	0.011	P
	GSM480220 extract 1	15.956	0.002	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	4.51017	0.334	A
	GSM480221 extract 1	11.8194	0.219	A
	GSM480222 extract 1	1.02992	0.634	A
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	20.1831	0.001	P
	GSM480190 extract 1	12.9062	0.022	P
	GSM480192 extract 1	8.21725	0.001	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	3.06839	0.145	A
	GSM480195 extract 1	7.10936	0.004	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	56.8818	2e-4	P
	GSM480198 extract 1	15.0678	0.011	P
	GSM480199 extract 1	13.6593	0.006	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	10.0306	0.030	P
	GSM480193 extract 1	30.6457	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	13.6838	0.019	P
	GSM480228 extract 1	2.2	0.399	A
	GSM480230 extract 1	1.97332	0.492	A
	GSM480231 extract 1	11.6585	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	120.855	0.019	P
	GSM480169 extract 1	196.153	0.011	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	1207.79	2e-4	P
	GSM480173 extract 1	1474.84	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	2867.34	2e-4	P
	GSM480175 extract 1	2793.23	2e-4	P
	GSM480176 extract 1	1656.89	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	2379.25	2e-4	P
	GSM480178 extract 1	2046.18	2e-4	P
	GSM480179 extract 1	1670.01	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	870.966	2e-4	P
	GSM480201 extract 1	555.423	2e-4	P
	GSM480202 extract 1	546.49	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	374.999	2e-4	P
	GSM480204 extract 1	554.568	2e-4	P
	GSM480205 extract 1	467.318	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	220.048	2e-4	P
	GSM480181 extract 1	393.754	2e-4	P
	GSM480182 extract 1	437.081	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	1185.83	2e-4	P
	GSM480189 extract 1	818.958	2e-4	P
	GSM480187 extract 1	874.784	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	501.239	2e-4	P
	GSM480183 extract 1	327.571	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	221.396	2e-4	P
	GSM480166 extract 1	229.64	2e-4	P
	GSM480167 extract 1	241.118	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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