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Expression Template: LesAffx.41330.1.A1_at

Template Basic Information

Template name:	LesAffx.41330.1.A1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U568307
External db links:	GenBank: CK574967

Annotations for unigene SGN-U568307 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147779401\|emb\|CAN76796.1\|	234	5e-60	60.7	576 bp (67.1%)	3
Description:	hypothetical
arabidopsis	blastx	At3G59400.1	220	1e-57	72.11	441 bp (51.4%)	3
Description:	Symbols: GUN4 \| GUN4 (Genomes uncoupled 4) \| chr3:21959858-21960655 REVERSE
swissprot	blastx	Q9LX31	220	9e-57	72.11	441 bp (51.4%)	3
Description:	Tetrapyrrole-binding protein, chloroplastic OS=Arabidopsis thaliana GN=GUN4 PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.41330.1.A1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.41330.1.A1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.41330.1.A1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.41330.1.A1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.41330.1.A1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.41330.1.A1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.41330.1.A1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.41330.1.A1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.41330.1.A1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.41330.1.A1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.41330.1.A1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	1249.56	1249.56	526.14	0.42
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	8.69	9.30	1.11	0.13
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	17.80	19.08	3.39	0.19
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	6.48	6.48	2.93	0.45
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	2.13	2.13	1.87	0.88
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	6.14	6.14	2.05	0.33
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	103.98	107.38	6.93	0.07
	Gene expression data from Aft red fruit peel	exocarp	3	3	16.89	17.05	0.62	0.04
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	168.42	167.27	3.58	0.02
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	22.69	21.07	6.99	0.31
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	13.96	14.24	7.25	0.52
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	6.27	6.27	4.85	0.77
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	1.99	0.62	2.44	1.23
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	4.36	4.36	5.86	1.34
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	14.03	14.61	5.29	0.38
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	471.39	471.39	244.86	0.52
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	1272.42	1272.42	65.09	0.05
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	1515.69	1117.58	933.77	0.62
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	2522.50	2469.40	113.57	0.05
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	109.20	94.66	70.68	0.65
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	9.34	9.66	2.15	0.23
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	206.26	173.40	69.35	0.34
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	7.61	9.03	5.00	0.66
	Gene expression data from Micro-Tom root	root	3	3	5.22	5.89	3.66	0.70

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	877.53	2e-4	P
	GSM480171 extract 1	1621.6	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	9.2978	0.004	P
	GSM480217 extract 1	7.40345	0.112	A
	GSM480216 extract 1	9.36889	0.195	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	19.0768	0.003	P
	GSM480181 extract 1	20.3617	2e-4	P
	GSM480180 extract 1	13.948	0.004	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	8.55036	0.095	A
	GSM480186 extract 1	4.40057	0.024	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	3.9979	0.726	A
	GSM480189 extract 1	2.13212	0.359	A
	GSM480188 extract 1	0.26306	0.968	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	4.69295	0.366	A
	GSM480184 extract 1	7.58656	0.019	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	107.379	2e-4	P
	GSM480208 extract 1	108.549	2e-4	P
	GSM480207 extract 1	95.9997	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	16.2053	0.008	P
	GSM480209 extract 1	17.4255	0.004	P
	GSM480210 extract 1	17.0467	7e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	167.27	2e-4	P
	GSM480219 extract 1	165.548	2e-4	P
	GSM480220 extract 1	172.429	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	16.6451	0.150	A
	GSM480222 extract 1	21.0744	2e-4	P
	GSM480223 extract 1	30.3366	0.003	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	14.241	0.008	P
	GSM480190 extract 1	6.5779	0.219	A
	GSM480192 extract 1	21.0687	0.008	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	2.84086	0.304	A
	GSM480196 extract 1	9.6999	7e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	4.81642	0.534	A
	GSM480197 extract 1	0.550908	0.805	A
	GSM480198 extract 1	0.616091	0.696	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	0.21991	0.992	A
	GSM480194 extract 1	8.50164	0.011	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	11.7164	0.046	P
	GSM480229 extract 1	7.70578	0.150	A
	GSM480230 extract 1	17.4991	0.003	P
	GSM480231 extract 1	19.1896	0.002	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	298.246	2e-4	P
	GSM480169 extract 1	644.536	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	1318.44	2e-4	P
	GSM480173 extract 1	1226.39	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	1117.58	2e-4	P
	GSM480174 extract 1	846.95	2e-4	P
	GSM480176 extract 1	2582.53	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	2652.9	2e-4	P
	GSM480178 extract 1	2445.21	2e-4	P
	GSM480179 extract 1	2469.4	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	94.6634	2e-4	P
	GSM480200 extract 1	46.9174	2e-4	P
	GSM480202 extract 1	186.025	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	7.0451	0.219	A
	GSM480203 extract 1	11.308	0.008	P
	GSM480204 extract 1	9.66474	0.038	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	285.937	2e-4	P
	GSM480212 extract 1	173.396	2e-4	P
	GSM480213 extract 1	159.451	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	10.4339	0.011	P
	GSM480226 extract 1	7.63261	0.081	A
	GSM480225 extract 1	0.57695	0.466	A
	GSM480227 extract 1	11.8102	0.006	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	5.89044	0.011	P
	GSM480166 extract 1	1.26929	0.870	A
	GSM480167 extract 1	8.48809	0.038	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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