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Expression Template: LesAffx.10974.1.S1_at

Template Basic Information

Template name:	LesAffx.10974.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U574492
External db links:	GenBank: BM411012

Annotations for unigene SGN-U574492 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147862982\|emb\|CAN82996.1\|	525	3e-147	74.51	1059 bp (80.1%)	3
Description:	hypothetical protein [Vitis vinifera]
arabidopsis	blastx	At4G11570.2	454	4e-128	61.9	1131 bp (85.6%)	3
Description:	haloacid dehalogenase-like hydrolase family protein \| chr4:7004737-7005858 FORWARD
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.10974.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.10974.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.10974.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.10974.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.10974.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.10974.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.10974.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.10974.1.S1_at:ProbePair9	PM	data not available	data not available	data not available
LesAffx.10974.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.10974.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.10974.1.S1_at:ProbePair10	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	499.44	499.44	19.89	0.04
	Gene expression data from Aft red fruit flesh	endocarp	3	3	929.83	901.48	68.44	0.07
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	1589.66	1566.11	102.00	0.06
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	1031.15	1031.15	392.18	0.38
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	819.95	810.65	70.17	0.09
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	763.03	754.96	75.65	0.10
	Gene expression data from Aft red fruit peel	exocarp	3	3	1093.10	1056.61	115.84	0.11
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1138.30	1110.31	63.19	0.06
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	1597.26	1643.48	82.82	0.05
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	1042.06	1049.25	91.65	0.09
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	1753.54	1753.54	157.19	0.09
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	1349.78	1366.03	49.59	0.04
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	999.51	999.51	1.98	0.00
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	1382.80	1437.85	374.34	0.27
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	317.29	317.29	88.24	0.28
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	521.25	521.25	8.82	0.02
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	683.51	661.42	55.29	0.08
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	668.00	643.73	164.40	0.25
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	615.80	611.06	26.68	0.04
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	981.31	1009.87	60.78	0.06
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	931.51	885.65	91.91	0.10
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	980.81	839.74	267.94	0.27
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	686.94	686.94	93.00	0.14
	Gene expression data from Micro-Tom root	root	3	3	266.20	243.58	49.61	0.19

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	485.371	2e-4	P
	GSM480171 extract 1	513.5	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	880.114	2e-4	P
	GSM480204 extract 1	1007.89	2e-4	P
	GSM480205 extract 1	901.485	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	1501.5	2e-4	P
	GSM480215 extract 1	1566.11	2e-4	P
	GSM480217 extract 1	1701.38	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	1308.46	2e-4	P
	GSM480186 extract 1	753.84	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	906.475	2e-4	P
	GSM480225 extract 1	845.979	2e-4	P
	GSM480226 extract 1	752.023	2e-4	P
	GSM480227 extract 1	775.314	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	754.956	2e-4	P
	GSM480206 extract 1	691.741	2e-4	P
	GSM480207 extract 1	842.393	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	1222.79	2e-4	P
	GSM480210 extract 1	1056.61	2e-4	P
	GSM480211 extract 1	999.905	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	1210.65	2e-4	P
	GSM480219 extract 1	1093.94	2e-4	P
	GSM480220 extract 1	1110.31	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	1501.64	2e-4	P
	GSM480222 extract 1	1646.66	2e-4	P
	GSM480223 extract 1	1643.48	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	1049.25	2e-4	P
	GSM480190 extract 1	947.033	2e-4	P
	GSM480191 extract 1	1129.91	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	1642.39	2e-4	P
	GSM480195 extract 1	1864.69	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	1389.2	2e-4	P
	GSM480199 extract 1	1294.1	2e-4	P
	GSM480198 extract 1	1366.03	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	998.107	2e-4	P
	GSM480194 extract 1	1000.91	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	1445.77	2e-4	P
	GSM480229 extract 1	1779.5	2e-4	P
	GSM480230 extract 1	1429.93	2e-4	P
	GSM480231 extract 1	876.009	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	379.684	2e-4	P
	GSM480169 extract 1	254.896	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	515.014	2e-4	P
	GSM480172 extract 1	527.482	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	661.423	2e-4	P
	GSM480174 extract 1	642.679	2e-4	P
	GSM480176 extract 1	746.429	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	517.09	2e-4	P
	GSM480177 extract 1	843.185	2e-4	P
	GSM480178 extract 1	643.729	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	611.059	2e-4	P
	GSM480202 extract 1	644.532	2e-4	P
	GSM480201 extract 1	591.807	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	1022.56	2e-4	P
	GSM480213 extract 1	1009.87	2e-4	P
	GSM480214 extract 1	911.509	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	1037.32	2e-4	P
	GSM480180 extract 1	885.65	2e-4	P
	GSM480182 extract 1	871.552	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	839.745	2e-4	P
	GSM480187 extract 1	1289.81	2e-4	P
	GSM480189 extract 1	812.87	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	752.706	2e-4	P
	GSM480184 extract 1	621.183	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	243.585	2e-4	P
	GSM480165 extract 1	323.092	2e-4	P
	GSM480167 extract 1	231.92	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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