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Expression Template: LesAffx.62406.1.S1_at

Template Basic Information

Template name:	LesAffx.62406.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U581882
External db links:	GenBank: BM412465

Annotations for unigene SGN-U581882 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15237741\|ref\|NP_200681.1\|	241	2e-82	66.48	537 bp (55.1%)	3
Description:	pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] >gi16604509\|gb\|AAL24260.1\| &hellip
arabidopsis	blastx	At5G58730.1	241	1e-84	66.48	537 bp (55.1%)	3
Description:	pfkB-type carbohydrate kinase family protein \| chr5:23740853-23742550 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.62406.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.62406.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.62406.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.62406.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.62406.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.62406.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.62406.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.62406.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.62406.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.62406.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.62406.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	34.04	34.04	0.35	0.01
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	69.48	76.91	15.63	0.23
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	90.77	91.58	2.02	0.02
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	49.58	39.80	32.80	0.66
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	57.60	60.22	4.80	0.08
	Gene expression data from Aft red fruit peel	exocarp	3	3	79.71	78.89	10.92	0.14
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	58.00	55.16	5.78	0.10
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	61.61	60.93	9.58	0.16
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	94.84	79.36	27.17	0.29
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	158.91	158.91	11.53	0.07
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	126.26	129.24	7.23	0.06
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	134.66	134.66	18.29	0.14
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	43.06	29.78	31.10	0.72
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	86.08	86.08	11.03	0.13
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	28.04	28.04	6.68	0.24
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	40.08	46.69	14.08	0.35
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	41.08	40.59	2.27	0.06
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	101.85	98.64	6.49	0.06
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	61.47	64.21	13.32	0.22
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	101.34	101.51	4.03	0.04
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	148.05	148.05	19.37	0.13
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	131.76	129.76	4.80	0.04
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	144.05	144.05	20.82	0.14
	Gene expression data from Micro-Tom root	root	3	3	63.80	64.54	10.36	0.16

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	34.28	0.002	P
	GSM480171 extract 1	33.7903	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	51.5117	2e-4	P
	GSM480200 extract 1	80.0037	2e-4	P
	GSM480201 extract 1	76.914	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	88.4717	2e-4	P
	GSM480181 extract 1	91.5848	2e-4	P
	GSM480182 extract 1	92.2529	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	21.6747	0.081	A
	GSM480224 extract 1	41.1174	0.006	P
	GSM480226 extract 1	38.4811	7e-4	P
	GSM480227 extract 1	97.0549	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	60.5227	2e-4	P
	GSM480208 extract 1	60.2237	2e-4	P
	GSM480207 extract 1	52.0679	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	91.0181	2e-4	P
	GSM480209 extract 1	78.8873	2e-4	P
	GSM480210 extract 1	69.2252	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	55.1587	2e-4	P
	GSM480219 extract 1	64.6574	2e-4	P
	GSM480218 extract 1	54.1902	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	60.9286	0.002	P
	GSM480222 extract 1	52.3897	2e-4	P
	GSM480223 extract 1	71.5111	7e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	126.22	2e-4	P
	GSM480191 extract 1	79.3559	2e-4	P
	GSM480192 extract 1	78.9566	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	167.064	2e-4	P
	GSM480195 extract 1	150.76	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	131.527	2e-4	P
	GSM480197 extract 1	118.018	2e-4	P
	GSM480198 extract 1	129.242	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	121.727	2e-4	P
	GSM480194 extract 1	147.591	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	23.3485	7e-4	P
	GSM480229 extract 1	26.6368	2e-4	P
	GSM480231 extract 1	89.3243	2e-4	P
	GSM480230 extract 1	32.9201	0.001	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	78.2811	2e-4	P
	GSM480169 extract 1	93.8837	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	32.7653	2e-4	P
	GSM480173 extract 1	23.3228	0.002	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	49.6408	0.002	P
	GSM480174 extract 1	23.9061	2e-4	P
	GSM480175 extract 1	46.6932	0.004	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	39.0875	7e-4	P
	GSM480178 extract 1	43.5544	2e-4	P
	GSM480179 extract 1	40.5931	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	97.5994	2e-4	P
	GSM480204 extract 1	109.325	2e-4	P
	GSM480205 extract 1	98.6378	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	46.9955	2e-4	P
	GSM480212 extract 1	73.2213	2e-4	P
	GSM480213 extract 1	64.2067	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	105.277	2e-4	P
	GSM480215 extract 1	101.507	2e-4	P
	GSM480217 extract 1	97.2244	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	134.351	2e-4	P
	GSM480186 extract 1	161.75	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	129.763	2e-4	P
	GSM480189 extract 1	128.282	2e-4	P
	GSM480188 extract 1	137.229	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	129.334	2e-4	P
	GSM480184 extract 1	158.772	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	53.0966	2e-4	P
	GSM480166 extract 1	64.5399	2e-4	P
	GSM480167 extract 1	73.7747	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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