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Expression Template: LesAffx.51780.1.S1_at

Template Basic Information

Template name:	LesAffx.51780.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U575475
External db links:	GenBank: BM410947

Annotations for unigene SGN-U575475 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157343059\|emb\|CAO66548.1\|	311	6e-83	76	600 bp (64.7%)	-2
Description:	unnamed
arabidopsis	blastx	At4G31040.1	301	5e-82	74	600 bp (64.7%)	-2
Description:	proton extrusion protein-related \| chr4:15111817-15113887 REVERSE
swissprot	blastx	Q31PJ8	125	3e-28	39.26	489 bp (52.7%)	-2
Description:	Proton extrusion protein pcxA OS=Synechococcus elongatus (strain PCC 7942) GN=pcxA

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.51780.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.51780.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.51780.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.51780.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.51780.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.51780.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.51780.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.51780.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.51780.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.51780.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.51780.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	142.58	142.58	15.90	0.11
	Gene expression data from Aft red fruit flesh	endocarp	3	3	9.19	8.98	1.51	0.16
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	12.40	12.40	6.44	0.52
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	10.30	8.85	2.69	0.26
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	10.88	10.88	1.93	0.18
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	9.37	8.54	2.54	0.27
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	24.13	23.46	6.41	0.27
	Gene expression data from Aft red fruit peel	exocarp	3	3	24.04	21.55	10.33	0.43
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	39.88	37.31	4.55	0.11
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	34.26	33.67	1.08	0.03
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	23.63	24.27	2.12	0.09
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	28.68	28.68	8.46	0.29
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	22.13	21.75	4.88	0.22
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	18.29	18.29	3.32	0.18
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	24.65	25.10	2.08	0.08
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	44.43	44.43	13.94	0.31
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	141.03	141.03	18.40	0.13
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	102.27	100.36	12.19	0.12
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	78.37	78.56	4.85	0.06
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	13.50	12.82	4.67	0.35
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	28.58	30.02	5.33	0.19
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	22.68	26.46	9.68	0.43
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	27.51	27.50	6.21	0.23
	Gene expression data from Micro-Tom root	root	3	3	22.39	22.29	1.87	0.08

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	131.334	2e-4	P
	GSM480171 extract 1	153.824	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	10.7893	0.019	P
	GSM480203 extract 1	8.97704	0.030	P
	GSM480204 extract 1	7.79863	0.081	A
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	16.9536	7e-4	P
	GSM480186 extract 1	7.84952	0.008	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	8.64351	0.004	P
	GSM480187 extract 1	8.85102	0.019	P
	GSM480189 extract 1	13.4051	0.008	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	12.2495	0.004	P
	GSM480183 extract 1	9.51548	0.038	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	7.33388	0.274	A
	GSM480224 extract 1	8.2012	0.056	M
	GSM480227 extract 1	8.88878	0.002	P
	GSM480226 extract 1	13.0588	0.081	A
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	23.4594	0.001	P
	GSM480206 extract 1	30.8488	7e-4	P
	GSM480208 extract 1	18.0901	7e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	21.5491	0.001	P
	GSM480209 extract 1	35.3799	0.008	P
	GSM480210 extract 1	15.1795	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	45.1315	2e-4	P
	GSM480218 extract 1	37.3082	7e-4	P
	GSM480220 extract 1	37.1962	0.001	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	33.6718	7e-4	P
	GSM480221 extract 1	35.5076	2e-4	P
	GSM480222 extract 1	33.6043	7e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	24.2674	7e-4	P
	GSM480192 extract 1	21.2669	0.006	P
	GSM480191 extract 1	25.3575	0.003	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	22.7015	2e-4	P
	GSM480196 extract 1	34.6605	0.001	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	21.7497	0.006	P
	GSM480197 extract 1	17.4556	0.006	P
	GSM480199 extract 1	27.1909	0.002	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	15.947	0.001	P
	GSM480194 extract 1	20.6393	7e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	26.4279	7e-4	P
	GSM480229 extract 1	21.9544	0.014	P
	GSM480231 extract 1	24.0767	2e-4	P
	GSM480230 extract 1	26.13	0.024	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	34.5755	2e-4	P
	GSM480169 extract 1	54.2833	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	128.019	2e-4	P
	GSM480172 extract 1	154.035	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	115.305	2e-4	P
	GSM480176 extract 1	100.361	2e-4	P
	GSM480175 extract 1	91.1417	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	78.5635	0.001	P
	GSM480177 extract 1	73.4265	2e-4	P
	GSM480179 extract 1	83.1203	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	18.4774	0.008	P
	GSM480200 extract 1	12.8159	0.019	P
	GSM480202 extract 1	9.2204	0.095	A
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	22.683	2e-4	P
	GSM480213 extract 1	33.042	2e-4	P
	GSM480214 extract 1	30.0242	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	29.9127	0.008	P
	GSM480215 extract 1	11.6816	0.001	P
	GSM480217 extract 1	26.4597	0.006	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	27.5044	0.014	P
	GSM480181 extract 1	33.7187	2e-4	P
	GSM480182 extract 1	21.2989	0.006	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	20.5745	0.019	P
	GSM480165 extract 1	22.2904	0.002	P
	GSM480167 extract 1	24.3081	7e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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