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Expression Template: LesAffx.33607.1.S1_s_at

Template Basic Information

Template name:	LesAffx.33607.1.S1_s_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U580097
External db links:	GenBank: AW223067

Annotations for unigene SGN-U580097 (manual: 2 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLEG-30-K11, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: E8 homolog Annotation Keywords: hormone responses; ethylene responses; ripening related

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|119640\|sp\|P10967\|ACCH3_SOLLC	364	5e-145	99.47	567 bp (57.3%)	2
Description:	RecName:
arabidopsis	blastx	At1G06620.1	216	3e-78	59.38	573 bp (57.9%)	2
Description:	2-oxoglutarate-dependent dioxygenase, putative \| chr1:2025617-2027093 FORWARD
swissprot	blastx	P10967	364	3e-146	99.47	567 bp (57.3%)	2
Description:	1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.33607.1.S1_s_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.33607.1.S1_s_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.33607.1.S1_s_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.33607.1.S1_s_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.33607.1.S1_s_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.33607.1.S1_s_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.33607.1.S1_s_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.33607.1.S1_s_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.33607.1.S1_s_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.33607.1.S1_s_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.33607.1.S1_s_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	56.24	56.24	4.03	0.07
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	5296.10	5650.99	660.03	0.12
	Gene expression data from Aft red fruit flesh	endocarp	3	3	6728.65	6683.31	478.69	0.07
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	4264.74	3705.25	1292.60	0.30
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	8864.95	9054.39	334.22	0.04
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	5107.88	5515.31	761.93	0.15
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	8924.62	8924.62	246.82	0.03
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	6550.41	6123.63	848.96	0.13
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	1545.38	1587.79	632.21	0.41
	Gene expression data from Aft red fruit peel	exocarp	3	3	6237.42	6085.79	508.07	0.08
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1338.31	1541.68	456.41	0.34
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	6157.14	6113.52	672.57	0.11
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	3594.20	3661.71	1209.61	0.34
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	8414.96	8414.96	1637.94	0.19
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	5061.45	4833.36	1383.68	0.27
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	7825.78	7825.78	344.98	0.04
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	8298.52	8351.14	709.39	0.09
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	14.26	14.26	2.74	0.19
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	33.45	33.45	4.85	0.15
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	105.54	110.23	25.07	0.24
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	81.44	82.79	14.25	0.18
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	7525.45	7525.45	1134.61	0.15
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	7747.19	8249.04	1790.73	0.23
	Gene expression data from Micro-Tom root	root	3	3	136.52	114.64	41.85	0.31

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	53.3895	2e-4	P
	GSM480171 extract 1	59.0835	0.001	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	5650.99	2e-4	P
	GSM480200 extract 1	5702.77	2e-4	P
	GSM480202 extract 1	4534.55	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	6683.31	2e-4	P
	GSM480204 extract 1	7228.39	2e-4	P
	GSM480205 extract 1	6274.24	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	3705.25	2e-4	P
	GSM480212 extract 1	3346.13	2e-4	P
	GSM480213 extract 1	5742.83	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	8479.05	2e-4	P
	GSM480216 extract 1	9061.42	2e-4	P
	GSM480217 extract 1	9054.39	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	5515.31	2e-4	P
	GSM480181 extract 1	5579.47	2e-4	P
	GSM480182 extract 1	4228.86	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	8750.09	2e-4	P
	GSM480185 extract 1	9099.15	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	7528.08	2e-4	P
	GSM480189 extract 1	6123.63	2e-4	P
	GSM480188 extract 1	5999.52	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	2155.32	2e-4	P
	GSM480207 extract 1	893.033	2e-4	P
	GSM480208 extract 1	1587.79	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	5822.43	2e-4	P
	GSM480209 extract 1	6804.04	2e-4	P
	GSM480211 extract 1	6085.79	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	1657.68	2e-4	P
	GSM480218 extract 1	815.557	2e-4	P
	GSM480220 extract 1	1541.68	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	5507.44	2e-4	P
	GSM480223 extract 1	6113.52	2e-4	P
	GSM480221 extract 1	6850.46	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	4768.64	2e-4	P
	GSM480191 extract 1	3661.71	2e-4	P
	GSM480192 extract 1	2352.25	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	9573.15	2e-4	P
	GSM480196 extract 1	7256.76	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	6545.01	2e-4	P
	GSM480199 extract 1	3805.99	2e-4	P
	GSM480198 extract 1	4833.36	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	7581.84	2e-4	P
	GSM480193 extract 1	8069.72	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	9102.19	2e-4	P
	GSM480229 extract 1	8224.4	2e-4	P
	GSM480228 extract 1	7389.59	2e-4	P
	GSM480231 extract 1	8477.89	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	16.2022	0.006	P
	GSM480169 extract 1	12.3249	7e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	30.0159	2e-4	P
	GSM480173 extract 1	36.8774	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	110.227	2e-4	P
	GSM480175 extract 1	127.936	2e-4	P
	GSM480176 extract 1	78.4631	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	94.9704	7e-4	P
	GSM480178 extract 1	66.5599	2e-4	P
	GSM480179 extract 1	82.7927	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	6723.16	2e-4	P
	GSM480183 extract 1	8327.74	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480227 extract 1	5252.72	2e-4	P
	GSM480224 extract 1	8828.52	2e-4	P
	GSM480226 extract 1	7669.55	2e-4	P
	GSM480225 extract 1	9237.98	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	110.147	2e-4	P
	GSM480165 extract 1	114.64	2e-4	P
	GSM480166 extract 1	184.778	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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