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Expression Template: LesAffx.27587.1.S1_at

Template Basic Information

Template name:	LesAffx.27587.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U573343
External db links:	GenBank: BI207537

Annotations for unigene SGN-U573343 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147785386\|emb\|CAN70908.1\|	280	2e-73	66.3	804 bp (63.5%)	3
Description:	hypothetical
arabidopsis	blastx	At2G02960.4	254	8e-68	63.6	744 bp (58.8%)	3
Description:	zinc finger (C3HC4-type RING finger) family protein \| chr2:862345-863979 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.27587.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.27587.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.27587.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.27587.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.27587.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.27587.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.27587.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.27587.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.27587.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.27587.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.27587.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	226.32	226.32	14.69	0.06
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	186.98	192.76	13.99	0.07
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	103.96	146.01	90.57	0.87
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	190.04	182.33	39.84	0.21
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	268.94	268.94	25.83	0.10
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	160.93	156.58	11.54	0.07
	Gene expression data from Aft red fruit peel	exocarp	3	3	206.02	209.54	9.70	0.05
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	180.29	177.28	11.42	0.06
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	210.10	212.41	4.68	0.02
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	231.92	245.35	33.98	0.15
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	275.59	275.59	28.05	0.10
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	242.90	261.74	39.73	0.16
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	263.90	263.90	22.72	0.09
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	287.27	280.98	22.48	0.08
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	231.34	231.34	15.56	0.07
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	168.13	168.13	9.08	0.05
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	194.42	192.59	24.54	0.13
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	195.29	189.25	12.59	0.06
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	246.00	251.95	18.53	0.08
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	205.06	202.98	8.22	0.04
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	211.94	211.34	24.37	0.11
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	230.25	230.25	13.81	0.06
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	271.64	271.88	21.74	0.08
	Gene expression data from Micro-Tom root	root	3	3	253.21	246.07	15.31	0.06

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	215.935	2e-4	P
	GSM480171 extract 1	236.712	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	192.758	2e-4	P
	GSM480201 extract 1	197.164	2e-4	P
	GSM480202 extract 1	171.033	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	165.86	2e-4	P
	GSM480216 extract 1		0e+0	P
	GSM480217 extract 1	146.01	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	233.178	2e-4	P
	GSM480187 extract 1	154.626	2e-4	P
	GSM480189 extract 1	182.327	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	250.676	2e-4	P
	GSM480184 extract 1	287.21	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	156.581	2e-4	P
	GSM480207 extract 1	152.192	2e-4	P
	GSM480208 extract 1	174.007	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	209.543	2e-4	P
	GSM480211 extract 1	213.479	2e-4	P
	GSM480210 extract 1	195.053	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	177.281	2e-4	P
	GSM480219 extract 1	192.915	2e-4	P
	GSM480218 extract 1	170.682	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	204.721	2e-4	P
	GSM480222 extract 1	212.412	2e-4	P
	GSM480223 extract 1	213.174	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	257.141	2e-4	P
	GSM480191 extract 1	193.277	2e-4	P
	GSM480190 extract 1	245.351	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	295.422	2e-4	P
	GSM480196 extract 1	255.758	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	197.257	2e-4	P
	GSM480198 extract 1	261.735	2e-4	P
	GSM480199 extract 1	269.698	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	247.835	2e-4	P
	GSM480193 extract 1	279.96	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	288.421	2e-4	P
	GSM480230 extract 1	318.532	2e-4	P
	GSM480228 extract 1	273.536	2e-4	P
	GSM480231 extract 1	268.592	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	220.338	2e-4	P
	GSM480169 extract 1	242.345	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	174.554	2e-4	P
	GSM480172 extract 1	161.711	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	192.591	2e-4	P
	GSM480175 extract 1	219.826	2e-4	P
	GSM480176 extract 1	170.848	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	209.76	2e-4	P
	GSM480177 extract 1	189.25	2e-4	P
	GSM480179 extract 1	186.858	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	260.837	2e-4	P
	GSM480203 extract 1	225.227	2e-4	P
	GSM480205 extract 1	251.952	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	202.975	2e-4	P
	GSM480214 extract 1	214.117	2e-4	P
	GSM480212 extract 1	198.072	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	187.877	2e-4	P
	GSM480182 extract 1	211.342	2e-4	P
	GSM480181 extract 1	236.606	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	220.484	2e-4	P
	GSM480186 extract 1	240.014	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	264.861	2e-4	P
	GSM480224 extract 1	245.708	2e-4	P
	GSM480227 extract 1	297.067	2e-4	P
	GSM480226 extract 1	278.909	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	246.072	2e-4	P
	GSM480167 extract 1	242.768	2e-4	P
	GSM480166 extract 1	270.791	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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