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Expression Template: LesAffx.62334.1.S1_at

Template Basic Information

Template name:	LesAffx.62334.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U568309
External db links:	GenBank: AW647879

Annotations for unigene SGN-U568309 (manual: 0 | blast: 2 | go: 3 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147833933\|emb\|CAN68305.1\|	131	2e-29	92	225 bp (40.8%)	2
Description:	hypothetical
arabidopsis	blastx	At1G26945.1	123	6e-29	85.14	222 bp (40.3%)	2
Description:	transcription regulator \| chr1:9351558-9352461 FORWARD
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

GO:0045449regulation of transcription
GO:0005634nucleus
GO:0030528transcription regulator activity

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.62334.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.62334.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.62334.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.62334.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.62334.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.62334.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.62334.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.62334.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.62334.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.62334.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.62334.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	11.66	11.66	2.43	0.21
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	1.98	2.78	1.55	0.79
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	6.10	5.24	2.17	0.36
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	2.27	2.27	2.84	1.25
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	3.21	3.10	2.90	0.90
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	0.32	0.32	0.26	0.79
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	9.96	11.11	6.83	0.69
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	4.02	4.51	2.81	0.70
	Gene expression data from Aft red fruit peel	exocarp	3	3	1.31	1.04	1.18	0.90
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	2.73	2.51	2.58	0.94
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	4.24	4.42	3.22	0.76
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	0.36	0.37	0.24	0.65
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	2.70	2.70	1.74	0.65
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	3.17	3.06	1.19	0.37
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	0.12	0.12	0.00	0.01
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	3.15	1.71	3.57	1.13
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	73.45	73.45	40.34	0.55
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	18.87	18.87	0.99	0.05
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	74.27	51.95	43.46	0.59
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	132.61	135.40	11.94	0.09
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	0.59	0.46	0.50	0.86
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	3.70	2.50	3.69	1.00
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	1.43	0.60	1.97	1.38
	Gene expression data from Micro-Tom root	root	3	3	67.37	64.38	6.06	0.09

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	9.93823	0.014	P
	GSM480171 extract 1	13.3742	0.011	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	2.77657	0.195	A
	GSM480200 extract 1	0.187035	0.932	A
	GSM480201 extract 1	2.9662	0.534	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	8.57263	0.068	A
	GSM480180 extract 1	4.48703	0.246	A
	GSM480182 extract 1	5.23977	0.219	A
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	0.263587	0.968	A
	GSM480185 extract 1	4.27524	0.219	A
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	0.366181	0.998	A
	GSM480187 extract 1	6.15729	0.195	A
	GSM480188 extract 1	3.09938	0.500	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	0.504116	0.850	A
	GSM480183 extract 1	0.143253	1.000	A
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	14.4599	0.130	A
	GSM480224 extract 1	7.76683	0.130	A
	GSM480225 extract 1	16.2975	0.068	A
	GSM480227 extract 1	1.31441	0.829	A
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	4.50536	0.219	A
	GSM480207 extract 1	0.996166	0.696	A
	GSM480208 extract 1	6.55035	0.171	A
Gene expression data from Aft red fruit peel	GSM480209 extract 1	2.6039	0.366	A
	GSM480210 extract 1	0.291122	0.829	A
	GSM480211 extract 1	1.03683	0.666	A
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	2.50749	0.274	A
	GSM480218 extract 1	0.274201	0.905	A
	GSM480220 extract 1	5.4185	0.030	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	0.925494	0.781	A
	GSM480221 extract 1	7.36226	0.150	A
	GSM480223 extract 1	4.42429	0.500	A
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	0.121587	0.944	A
	GSM480190 extract 1	0.367577	0.932	A
	GSM480192 extract 1	0.592988	0.666	A
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	3.93289	0.366	A
	GSM480196 extract 1	1.46667	0.688	A
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	3.05955	0.466	A
	GSM480198 extract 1	4.41629	0.466	A
	GSM480199 extract 1	2.04699	0.432	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	0.117987	0.962	A
	GSM480194 extract 1	0.115704	0.970	A
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	8.45852	0.274	A
	GSM480228 extract 1	1.73926	0.534	A
	GSM480230 extract 1	0.707844	0.829	A
	GSM480231 extract 1	1.68724	0.666	A
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	44.929	2e-4	P
	GSM480168 extract 1	101.977	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	18.1747	7e-4	P
	GSM480173 extract 1	19.5692	7e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	46.5103	2e-4	P
	GSM480175 extract 1	51.9481	2e-4	P
	GSM480176 extract 1	124.349	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	119.515	2e-4	P
	GSM480178 extract 1	135.405	2e-4	P
	GSM480179 extract 1	142.905	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	0.161495	0.932	A
	GSM480204 extract 1	1.14369	0.829	A
	GSM480205 extract 1	0.456818	0.805	A
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	7.84666	0.334	A
	GSM480213 extract 1	0.758188	0.500	A
	GSM480214 extract 1	2.50417	0.466	A
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	0.600523	0.829	A
	GSM480216 extract 1		0e+0	P
	GSM480217 extract 1	3.67661	0.334	A
Gene expression data from Micro-Tom root	GSM480166 extract 1	63.3732	2e-4	P
	GSM480165 extract 1	64.3841	2e-4	P
	GSM480167 extract 1	74.3419	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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