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Clone hba-15a13

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Clone
Clone name
hba-15a13
LE_HBa0015A13
C11HBa0015A13
P015A13
Clone type
BAC
Contamination
none
Estimated length
133,165
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this? 
Plausible matches Additional Info
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
FISH map 
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
372-08 1CompositeFluorescencePhase56.9%
372-09 1CompositeFluorescencePhase58.5%
372-15 1CompositeFluorescencePhase59.7%
372-18 1CompositeFluorescencePhase56.9%
372-19 1CompositeFluorescencePhase56.3%
372-20 1CompositeFluorescencePhase65.0%
372-22 1CompositeFluorescencePhase55.0%
372-24 1CompositeFluorescencePhase61.5%
372-25 1CompositeFluorescencePhase57.2%
372-28 1CompositeFluorescencePhase54.2%
372-29a 1CompositeFluorescencePhase57.0%
372-29b 1CompositeFluorescencePhase57.1%
372-30 1CompositeFluorescencePhase57.3%
372-32 1CompositeFluorescencePhase62.5%
372-33 1CompositeFluorescencePhase55.4%
Mean±sd58.0%±3.0%

Given an estimated length of 6.5µm for chromosome 11P and the mean percentage above, this BAC is approximately 3.8µm±0.2µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 11 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 11
HTGS phase
none
Sequencing Status
not_sequenced
Sequencing Organization
not recorded
Full Sequence
Sequence not available.
End Sequences
Warnings
none
FTP
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (25)
1556, 1667, 1845, 3218, 3218, 3467, 3551, 3868, 3868, 4268, 4268, 4268, 5147, 5427, 5740, 5921, 5921, 6232, 6232, 6428, 6428, 7645, 8555, 10109, 14318
Annotations  
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LE_HBa0015A13 has no browsable sequence annotations
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