Clone hba-271l5

Clone and library  
Clone
Clone name
hba-271l5
LE_HBa0271L05
C06HBa0271L05
P271L05
Clone type
BAC
Contamination
none
Estimated length
112,115
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg3341 : [coherent], 4 members:
C06HBa0003K02, LE_HBa0115H12, LE_HBa0178C12, C06HBa0271L05
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
TG178Tomato-EXPEN 2000plate 2G8
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 6
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 6 Sequencing Project. (View projects)
Log in as a curator or sequencer to edit this clone's registry information.
Sequencing Project
Chromosome 6
HTGS phase
1 - fragmented, unordered
Sequencing Status
complete
Sequencing Organization
not recorded
Full Sequence
162,487 bp
C06HBa0271L05.1
AC211068.1 (GenBank) 		[View]
[Download fasta]
[Download full submission] (213.68 MB)
End Sequences
None
Warnings
  • sequence is not finished to HTGS3
  • poor correspondence with in vitro restriction fragments
    (match score below 0.7)
  • sequence length 162,487 is 44.9% different from estimated length 112,115
 FTP
Chromosome 6 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (17)
2539, 2773, 2796, 3444, 3552, 3742, 5302, 5302, 5937, 6385, 6599, 7135, 7332, 10138, 11490, 11490, 16159
HindIII in silico (37)
1006, 1210, 1252, 1382, 1408, 1555, 1607, 1626, 1733, 1804, 1865, 1928, 2303, 2516, 2560, 2563, 2642, 2749, 2789, 2806, 2824, 3586, 3761, 3821, 4339, 4547, 4689, 5010, 5617, 6264, 6602, 7189, 7366, 10074, 11269, 11565, 15618
Fragment Lengths Match Score
0.65
Annotations  
Browse
LE_HBa0271L05 has no browsable sequence annotations
Download
 
User commentsNone[Add comment] 
Search again  
Genomic Clone Search Select a genomic clone at random

full names, partial names, or lists of both

 More Criteria

Seq. Center Reported Status
Estimated Length
 and  bp
GenBank Accession (version insensitive)
e.g. AP009318.1 or AP009318
Sequencing on Chromosome
Show Only Clones With







Annotations
End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

Related Links: