Clone hba-305l18

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Clone
Clone name
hba-305l18
LE_HBa0305L18
C00HBa0305L18
P305L18
Clone type
BAC
Contamination
none
Estimated length
122,843
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg515 : [coherent], 1 members:
C00HBa0305L18
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
T1606Tomato-EXPEN 2000plate 8C4
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome unmapped
FISH mapNot on FISH map
FISH imagesNone
IL Mapping 
Assigned to project
Italy
IL-mapped to chromosome
11
IL-mapped to IL segment
-
IL mapping notes
only t7 end mapped
Sequencing  
This clone is registered to be sequenced, but has not been successfully mapped to any chromosome.

Log in as a curator or sequencer to edit this clone's registry information.
Sequencing Project
Chromosome unmapped
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Wellcome Trust Sanger Institute
Full Sequence
134,797 bp
C00HBa0305L18.1
CU462870.14 (GenBank) 		[View]
[Download fasta]
[Download full submission] (0.08 MB)
End Sequences
None
Warnings
none
FTP
Unmapped Clones Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (28)
1136, 1275, 1297, 1524, 1524, 1736, 1736, 1862, 2004, 2175, 2191, 2464, 2522, 2542, 2697, 3023, 3562, 3562, 4327, 4569, 5152, 5823, 5823, 9469, 10874, 11271, 13021, 13682
HindIII in silico (30)
1127, 1127, 1268, 1501, 1534, 1733, 1733, 1858, 1997, 2200, 2315, 2427, 2491, 2554, 2724, 3027, 3027, 3590, 3608, 4317, 4507, 4859, 4911, 5479, 5538, 9423, 10774, 11327, 13006, 13668
Fragment Lengths Match Score
0.95
Annotations  
Browse
LE_HBa0305L18 has no browsable sequence annotations
Download
 
User comments [Add comment] 
Posted by Helen Beasley (sequencer) on 2008-04-11 04:29:51   
BAC sequenced by Chromosome 4 sequencing project (overgo for marker T1606). Marker not found in sequence. LE_HBa0305L18 moved from chromosome 4 as overlapping BAC LE_HBa0187P23 is not on Chromosome 4 from FISH analysis performed at Wageningen University (single focus in pericentromeric region).
See comments for LE_HBa0187P23.
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End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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