### Clone hba-325d7

 Clone and library
Clone
Clone name
hba-325d7
LE_HBa0325D07
C07HBa0325D07
P325D07
Clone type
BAC
Contamination
none
Estimated length
91,481
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
 Physical mapping
 Fingerprint Contig Builds (FPC)
 Marker matches - overgo what's this?
Conflicted matches
None

 Marker matches - BLAST None
 Marker matches - manual None
 Physical map (from marker matches)
 FISH map
 FISH images
(percentage of arm length)
644-01 1CompositeFluorescencePhase41.3%
644-04 1CompositeFluorescencePhase41.7%
644-11 1CompositeFluorescencePhase43.9%
644-16 1CompositeFluorescencePhase38.6%
644-18 1CompositeFluorescencePhase43.6%
644-19 1CompositeFluorescencePhase42.1%
644-23a 1CompositeFluorescencePhase48.3%
644-23b 1CompositeFluorescencePhase44.7%
644-24 1CompositeFluorescencePhase46.9%
644-29 1CompositeFluorescencePhase45.1%
644-37 1CompositeFluorescencePhase41.3%
644-38 1CompositeFluorescencePhase45.0%
644-45 1CompositeFluorescencePhase49.6%
644-48 1CompositeFluorescencePhase48.8%
644-49 1CompositeFluorescencePhase42.7%
644-52 1CompositeFluorescencePhase40.0%
Mean±sd44.0%±3.2%

Given an estimated length of 5.8µm for chromosome 7P and the mean percentage above, this BAC is approximately 2.6µm±0.2µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
 IL Mapping None
 Sequencing
This clone is being sequenced by the Chromosome 7 Sequencing Project. (View projects)
Log in as a curator or sequencer to edit this clone's registry information.
Sequencing Project
Chromosome 7
HTGS phase
2 - fragmented, ordered
Sequencing Status
complete
Sequencing Organization
Full Sequence
End Sequences
None
Warnings
• sequence is not finished to HTGS3
FTP
Chromosome Assembly
this clone is not part of a chromosome assembly

Restriction Fragments
 HindIII in vitro (22) 2029, 2029, 2193, 2239, 2295, 2619, 2901, 2986, 3208, 3309, 3700, 3731, 3911, 3911, 4499, 5103, 5628, 5779, 6166, 6210, 6755, 10280 HindIII in silico (31) 1399, 1436, 1495, 1820, 1875, 2021, 2046, 2191, 2256, 2314, 2645, 2906, 2968, 3222, 3347, 3745, 3755, 3786, 3801, 3929, 3932, 3987, 4425, 4833, 4862, 4884, 5316, 5449, 6714, 6827, 10097 Fragment Lengths Match Score 0.82
 Annotations
Browse
LE_HBa0325D07 has no browsable sequence annotations