Clone hba-3d15

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Clone
Clone name
hba-3d15
LE_HBa0003D15
C01HBa0003D15
P003D15
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
T1619Tomato-EXPEN 2000plate 8E11
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 1
FISH map 
View on FISH map chromosome 1
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
260-04a 1CompositeFluorescencePhase64.2%
260-04b 1CompositeFluorescencePhase64.4%
260-14 1CompositeFluorescencePhase64.7%
260-24 1CompositeFluorescencePhase62.2%
260-25 1CompositeFluorescencePhase64.8%
260-26 1CompositeFluorescencePhase66.5%
260-28 1CompositeFluorescencePhase62.9%
260-30 1CompositeFluorescencePhase61.3%
260-35 1CompositeFluorescencePhase67.8%
260-37 1CompositeFluorescencePhase59.8%
260-39 1CompositeFluorescencePhase63.3%
260-40a 1CompositeFluorescencePhase63.7%
260-40b 1CompositeFluorescencePhase62.0%
260-41a 1CompositeFluorescencePhase62.4%
260-41b 1CompositeFluorescencePhase62.4%
Mean±sd63.5%±2.0%

Given an estimated length of 6.7µm for chromosome 1P and the mean percentage above, this BAC is approximately 4.3µm±0.1µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL Mapping 
Assigned to project
USA
IL-mapped to chromosome
-
IL-mapped to IL segment
-
IL mapping notes
-
Sequencing  
This clone is being sequenced by the Chromosome 1 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 1
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
not recorded
Full Sequence
97,174 bp
C01HBa0003D15.1
AC193776.1 (GenBank) 		[View]
[Download fasta]
[Download full submission] (411.56 MB)
End Sequences
Warnings
none
FTP
Chromosome 1 Sequencing repository (FTP)
Chromosome Assembly
View on AGP map chromosome 1
  
Annotations  
Browse
LE_HBa0003D15 has no browsable sequence annotations
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End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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