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Clone hba-9j11

Clone and library  
Clone
Clone name
hba-9j11
LE_HBa0009J11
C12HBa0009J11
P009J11
Clone type
BAC
Contamination
none
Estimated length
106,130
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg2601 : [coherent], 6 members:
C12HBa0009J11, LE_HBa0050N24, LE_HBa0185A15, LE_HBa0198C21, LE_HBa0282O12, LE_HBa0304B15
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
T1185Tomato-EXPEN 2000plate 14C1
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 12
FISH mapNot on FISH map
FISH imagesNone
IL Mapping 
Assigned to project
Italy
IL-mapped to chromosome
-
IL-mapped to IL segment
-
IL mapping notes
-
Sequencing  
This clone is being sequenced by the Chromosome 12 Sequencing Project. (View projects)
Log in as a curator or sequencer to edit this clone's registry information.
Sequencing Project
Chromosome 12
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
not recorded
Full Sequence
117,580 bp
C12HBa0009J11.1
AC209660.1 (GenBank) 		[View]
[Download fasta]
[Download full submission] (206.68 MB)
End Sequences
Warnings
none
FTP
Chromosome 12 Sequencing repository (FTP)
Chromosome Assembly
View on AGP map chromosome 12
  
Restriction Fragments
HindIII in vitro (25)
1161, 1538, 1667, 2041, 2041, 2041, 2798, 2798, 2798, 2988, 3060, 3060, 3169, 3357, 4121, 4514, 4514, 4660, 4879, 5323, 5907, 6098, 8011, 11086, 12500
HindIII in silico (30)
1052, 1143, 1150, 1244, 1501, 1546, 1547, 1658, 1686, 2035, 2051, 2058, 2798, 2823, 2982, 3058, 3086, 3193, 3388, 4139, 4444, 4500, 4583, 4738, 5098, 5599, 5872, 7936, 10945, 12349
Fragment Lengths Match Score
0.90
Annotations  
Browse
LE_HBa0009J11 has no browsable sequence annotations
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End Sequences

e.g. crystallin
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Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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