Clone hba-64j13

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Clone
Clone name
hba-64j13
LE_HBa0064J13
C11HBa0064J13
P064J13
Clone type
BAC
Contamination
none
Estimated length
128,737
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg2416 : [coherent], 7 members:
C11HBa0064J13, C11HBa0128G07, LE_HBa0147P20, LE_HBa0170K16, LE_HBa0260P12, LE_HBa0276L12, LE_HBa0278G09
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
cLEB-7-L1Tomato-EXPEN 2000plate 10B10
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 11
FISH map 
View on FISH map chromosome 11
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
161-02 1CompositeFluorescencePhase41.1%
161-10 1CompositeFluorescencePhase38.9%
161-12 1CompositeFluorescencePhase43.8%
161-13 1CompositeFluorescencePhase41.0%
161-14 1CompositeFluorescencePhase39.6%
161-18a 1CompositeFluorescencePhase37.1%
161-18b 1CompositeFluorescencePhase37.2%
161-19 1CompositeFluorescencePhase41.1%
161-20 1CompositeFluorescencePhase40.7%
161-21 1CompositeFluorescencePhase40.0%
161-25 1CompositeFluorescencePhase38.9%
Mean±sd39.9%±1.9%

Given an estimated length of 6.5µm for chromosome 11P and the mean percentage above, this BAC is approximately 2.6µm±0.1µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 11 Sequencing Project. (View projects)
Log in as a curator or sequencer to edit this clone's registry information.
Sequencing Project
Chromosome 11
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
not recorded
Full Sequence
118,521 bp
C11HBa0064J13.2
AC171734.2 (GenBank) 		[View]
[Download fasta]
[Download full submission] (268.03 MB)
End Sequences
Warnings
none
FTP
Chromosome 11 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (27)
1417, 1417, 1490, 1753, 1888, 1981, 2060, 2060, 2088, 2088, 2254, 3035, 3100, 3100, 3471, 3578, 3914, 4411, 5292, 5740, 5901, 6325, 6714, 7990, 14187, 14779, 16704
HindIII in silico (29)
1065, 1241, 1322, 1408, 1420, 1493, 1743, 1868, 1956, 2022, 2046, 2076, 2089, 2258, 2904, 3094, 3099, 3497, 3603, 3941, 4394, 5052, 5491, 5610, 6175, 6665, 7909, 14442, 16144
Fragment Lengths Match Score
0.95
Annotations  
Browse
LE_HBa0064J13 has no browsable sequence annotations
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End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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