Clone hba-80c9

Clone and library  
Clone
Clone name
hba-80c9
LE_HBa0080C09
C00HBa0080C09
P080C09
Clone type
BAC
Contamination
none
Estimated length
102,729
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg4228 : [coherent], 2 members:
C00HBa0080C09, LE_HBa0147N04
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
TG40Tomato-EXPEN 2000plate 2D7
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome unmapped
FISH map 
View on FISH map chromosome 11
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
836-02 1CompositeFluorescencePhase42.2%
836-04 1CompositeFluorescencePhase41.1%
836-05 1CompositeFluorescencePhase46.5%
836-07 1CompositeFluorescencePhase38.5%
836-14 1CompositeFluorescencePhase43.1%
836-17 1CompositeFluorescencePhase37.0%
836-21 1CompositeFluorescencePhase37.0%
836-43 1CompositeFluorescencePhase42.9%
836-49 1CompositeFluorescencePhase41.6%
836-58 1CompositeFluorescencePhase44.4%
836-66 1CompositeFluorescencePhase36.1%
836-68 1CompositeFluorescencePhase45.2%
836-70 1CompositeFluorescencePhase37.5%
Mean±sd41.0%±3.5%

Given an estimated length of 6.5µm for chromosome 11P and the mean percentage above, this BAC is approximately 2.7µm±0.2µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is registered to be sequenced, but has not been successfully mapped to any chromosome.

Log in as a curator or sequencer to edit this clone's registry information.
Sequencing Project
Chromosome unmapped
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Wellcome Trust Sanger Institute
Full Sequence
115,143 bp
C00HBa0080C09.1
CU928194.8 (GenBank) 		[View]
[Download fasta]
[Download full submission] (0.07 MB)
End Sequences
Warnings
none
FTP
Unmapped Clones Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (18)
1885, 1885, 2031, 2151, 2825, 2902, 3410, 3410, 3618, 3833, 3923, 4556, 5075, 5615, 9400, 10975, 12106, 23129
HindIII in silico (22)
1170, 1388, 1554, 1596, 1847, 2017, 2845, 2920, 3401, 3433, 3466, 3671, 3837, 3933, 3996, 4522, 4847, 5242, 9335, 10642, 11841, 22092
Fragment Lengths Match Score
0.87
Annotations  
Browse
LE_HBa0080C09 has no browsable sequence annotations
Download
 
User comments [Add comment] 
Posted by Helen Beasley (sequencer) on 2009-02-20 07:29:26   
Moved to unmapped - pending chr4 confirmation at Imperial College.
Search again  
Genomic Clone Search Select a genomic clone at random

full names, partial names, or lists of both

 More Criteria

Seq. Center Reported Status
Estimated Length
 and  bp
GenBank Accession (version insensitive)
e.g. AP009318.1 or AP009318
Sequencing on Chromosome
Show Only Clones With







Annotations
End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

Related Links: