Clone hba-57c7

Clone and library  
Clone
Clone name
hba-57c7
LE_HBa0057C07
C01HBa0057C07
P057C07
Clone type
BAC
Contamination
none
Estimated length
110,866
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg4239 : [coherent], 3 members:
LE_HBa0018A19, C01HBa0057C07, C01HBa0159C14
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
T1485Tomato-EXPEN 2000plate 1F8
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 1
FISH map 
View on FISH map chromosome 1
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
658-01 1CompositeFluorescencePhase66.0%
658-11 1CompositeFluorescencePhase63.3%
658-13 1CompositeFluorescencePhase67.1%
658-15 1CompositeFluorescencePhase66.5%
658-17 1CompositeFluorescencePhase65.0%
658-18 1CompositeFluorescencePhase67.1%
658-19 1CompositeFluorescencePhase67.2%
658-20 1CompositeFluorescencePhase66.9%
658-21 1CompositeFluorescencePhase68.1%
658-23 1CompositeFluorescencePhase67.8%
658-24 1CompositeFluorescencePhase66.3%
658-27 1CompositeFluorescencePhase67.3%
658-40 1CompositeFluorescencePhase67.5%
658-43 1CompositeFluorescencePhase64.7%
658-49 1CompositeFluorescencePhase66.5%
658-50 1CompositeFluorescencePhase64.0%
658-54 1CompositeFluorescencePhase67.0%
658-55 1CompositeFluorescencePhase65.4%
658-57 1CompositeFluorescencePhase64.4%
Mean±sd66.2%±1.4%

Given an estimated length of 20.1µm for chromosome 1Q and the mean percentage above, this BAC is approximately 13.3µm±0.3µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL Mapping 
Assigned to project
USA
IL-mapped to chromosome
-
IL-mapped to IL segment
-
IL mapping notes
-
Sequencing  
This clone is being sequenced by the Chromosome 1 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 1
HTGS phase
3 - finished
Sequencing Status
in_progress
Sequencing Organization
Uploaded by account 'manual'
Full Sequence
113,672 bp
C01HBa0057C07.1
AC233133.4 (GenBank) 		[View]
[Download fasta]
[Download full submission] (0.07 MB)
End Sequences
Warnings
none
FTP
Chromosome 1 Sequencing repository (FTP)
Chromosome Assembly
View on AGP map chromosome 1
  
Restriction Fragments
HindIII in vitro (25)
1364, 1364, 1433, 1433, 1599, 1632, 1782, 1800, 1890, 1989, 1989, 2382, 2485, 2786, 3152, 3708, 5077, 5724, 6019, 6213, 6627, 7523, 11155, 13593, 16147
HindIII in silico (26)
1012, 1041, 1096, 1168, 1232, 1362, 1436, 1608, 1773, 1871, 1963, 1984, 2410, 2505, 2770, 3165, 3739, 4863, 5417, 5778, 6039, 6624, 7467, 11052, 13453, 15698
Fragment Lengths Match Score
0.95
Annotations  
Browse
LE_HBa0057C07 has no browsable sequence annotations
Download
temporarily unavailable
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End Sequences

e.g. crystallin
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Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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