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### Clone hba-107d15

 Clone and library
Clone
Clone name
hba-107d15
LE_HBa0107D15
C09HBa0107D15
P107D15
Clone type
BAC
Contamination
none
Estimated length
132,154
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
 Physical mapping
 Fingerprint Contig Builds (FPC)
Tomato FPC (AGI 2005)
ctg221 : [coherent], 11 members:
C12HBa0004J02, C12HBa0008G21, C12HBa0046F10, C12HBa0063E16, C09HBa0107D15, LE_HBa0120L04, C12HBa0121A09, LE_HBa0171J11, LE_HBa0190J18, LE_HBa0298O16, LE_HBa0321C23
 Marker matches - overgo what's this?
Conflicted matches
None

 Marker matches - BLAST None
 Marker matches - manual None
 Physical map (from marker matches)
 FISH map
 FISH images
(percentage of arm length)
138-04 1CompositeFluorescencePhase32.1%
138-05 1CompositeFluorescencePhase27.4%
138-07b 1CompositeFluorescencePhase32.5%
138-08 1CompositeFluorescencePhase28.9%
157-08a 1CompositeFluorescencePhase33.8%
157-08b 1CompositeFluorescencePhase28.2%
157-09 1CompositeFluorescencePhase36.1%
138-12 1CompositeFluorescencePhase30.1%
157-13 1CompositeFluorescencePhase28.1%
157-14 1CompositeFluorescencePhase36.3%
138-18 1CompositeFluorescencePhase30.1%
157-24 1CompositeFluorescencePhase30.1%
157-30 1CompositeFluorescencePhase33.5%
Mean±sd31.3%±3.0%

Given an estimated length of 9.7µm for chromosome 9Q and the mean percentage above, this BAC is approximately 3.0µm±0.3µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
 IL Mapping None
 Sequencing
This clone is being sequenced by the Chromosome 9 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 9
HTGS phase
1 - fragmented, unordered
Sequencing Status
complete
Sequencing Organization
not recorded
Full Sequence
End Sequences
Warnings
• sequence is not finished to HTGS3
FTP
Chromosome Assembly
Restriction Fragments
 HindIII in vitro (36) 1011, 1084, 1155, 1291, 1354, 1473, 1646, 1646, 1710, 1948, 2009, 2134, 2356, 2500, 2755, 2861, 2980, 3053, 3133, 3205, 3314, 3408, 3506, 3506, 3702, 4377, 4542, 4748, 5222, 5678, 6015, 6521, 6742, 8510, 9275, 11784 HindIII in silico (34) 1001, 1070, 1146, 1280, 1350, 1640, 1650, 1653, 1713, 1922, 2126, 2376, 2511, 2765, 2885, 2981, 3066, 3132, 3335, 3436, 3506, 3553, 3678, 3738, 4374, 4647, 5214, 5767, 6411, 6719, 7281, 8481, 11663, 12729 Fragment Lengths Match Score 0.96
 Annotations
Browse
LE_HBa0107D15 has no browsable sequence annotations