Clone hba-128g7

Clone and library  
Clone
Clone name
hba-128g7
LE_HBa0128G07
C11HBa0128G07
P128G07
Clone type
BAC
Contamination
none
Estimated length
126,956
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg2416 : [coherent], 7 members:
C11HBa0064J13, C11HBa0128G07, LE_HBa0147P20, LE_HBa0170K16, LE_HBa0260P12, LE_HBa0276L12, LE_HBa0278G09
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
cLEB-7-L1Tomato-EXPEN 2000plate 10B10
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 11
FISH map 
View on FISH map chromosome 11
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
421-05 1CompositeFluorescencePhase38.6%
421-06 1CompositeFluorescencePhase42.2%
421-09 1CompositeFluorescencePhase40.9%
421-10 1CompositeFluorescencePhase41.3%
421-12 1CompositeFluorescencePhase41.9%
421-13a 1CompositeFluorescencePhase39.4%
421-13b 1CompositeFluorescencePhase37.9%
421-15 1CompositeFluorescencePhase42.2%
421-19 1CompositeFluorescencePhase40.8%
421-20 1CompositeFluorescencePhase38.0%
421-21 1CompositeFluorescencePhase43.0%
421-23 1CompositeFluorescencePhase41.4%
421-25 1CompositeFluorescencePhase36.7%
421-29 1CompositeFluorescencePhase39.1%
421-30a 1CompositeFluorescencePhase41.4%
421-30b 1CompositeFluorescencePhase40.7%
421-41 1CompositeFluorescencePhase39.4%
421-42a 1CompositeFluorescencePhase43.1%
421-42b 1CompositeFluorescencePhase41.3%
421-55 1CompositeFluorescencePhase41.2%
Mean±sd40.5%±1.8%

Given an estimated length of 6.5µm for chromosome 11P and the mean percentage above, this BAC is approximately 2.6µm±0.1µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 11 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 11
HTGS phase
none
Sequencing Status
not_sequenced
Sequencing Organization
not recorded
Full Sequence
Sequence not available.
End Sequences
Warnings
none
FTP
Chromosome 11 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (33)
1082, 1082, 1143, 1196, 1196, 1255, 1335, 1412, 1474, 1485, 1744, 1885, 1987, 2045, 2066, 2095, 2258, 3077, 3100, 3504, 3615, 3936, 3936, 4390, 4390, 5310, 5785, 5864, 6320, 6722, 8043, 15183, 17041
Annotations  
Browse
LE_HBa0128G07 has no browsable sequence annotations
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 More Criteria

Seq. Center Reported Status
Estimated Length
 and  bp
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e.g. AP009318.1 or AP009318
Sequencing on Chromosome
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Annotations
End Sequences

e.g. crystallin
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Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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