Clone hba-131d4

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Clone
Clone name
hba-131d4
LE_HBa0131D04
C05HBa0131D04
P131D04
Clone type
BAC
Contamination
none
Estimated length
111,269
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg1821 : [coherent], 3 members:
LE_HBa0024O02, LE_HBa0102L21, C05HBa0131D04
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
T1584Tomato-EXPEN 2000plate 11D9
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 5
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 5 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 5
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Indian Agricultural Research Institute
Full Sequence
105,208 bp
C05HBa0131D04.2
AC186290.2 (GenBank) 		[View]
[Download fasta]
[Download full submission] (1189.83 MB)
End Sequences
Warnings
none
FTP
Chromosome 5 Sequencing repository (FTP)
Chromosome Assembly
View on AGP map chromosome 5
  
Restriction Fragments
HindIII in vitro (29)
1410, 1998, 2019, 2044, 2173, 2197, 2214, 2236, 2261, 2439, 2568, 2590, 2679, 2909, 3018, 3041, 3175, 3199, 3229, 3682, 3714, 4919, 4919, 5036, 6122, 7576, 8030, 8300, 11572
HindIII in silico (30)
1038, 1066, 1102, 1195, 1314, 1386, 1425, 1981, 2180, 2195, 2218, 2257, 2505, 2567, 2728, 2926, 3027, 3071, 3228, 3238, 3726, 3793, 4780, 4794, 4819, 4864, 5909, 7954, 8145, 11407
Fragment Lengths Match Score
0.96
Annotations  
Browse
LE_HBa0131D04 has no browsable sequence annotations
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temporarily unavailable
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End Sequences

e.g. crystallin
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Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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