Clone hba-166a2

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Clone
Clone name
hba-166a2
LE_HBa0166A02
C05HBa0166A02
P166A02
Clone type
BAC
Contamination
none
Estimated length
79,718
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg5237 : [coherent], 2 members:
LE_HBa0148C07, C05HBa0166A02
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
T1777Tomato-EXPEN 2000plate 11E12
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 5
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 5 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 5
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Indian Agricultural Research Institute
Full Sequence
116,862 bp
C05HBa0166A02.2
AC189287.2 (GenBank) 		[View]
[Download fasta]
[Download full submission] (1480.40 MB)
End Sequences
Warnings
  • sequence length 116,862 is 46.6% different from estimated length 79,718
 FTP
Chromosome 5 Sequencing repository (FTP)
Chromosome Assembly
View on AGP map chromosome 5
  
Restriction Fragments
HindIII in vitro (17)
1519, 1804, 1864, 2549, 2549, 2872, 2905, 3068, 3269, 3499, 3956, 6186, 6274, 6365, 7441, 10846, 12752
HindIII in silico (31)
1057, 1062, 1224, 1358, 1499, 1525, 1778, 1800, 1858, 2340, 2437, 2526, 2568, 2581, 2591, 2859, 2911, 2918, 2946, 2949, 3021, 3113, 3293, 3510, 4005, 5867, 6158, 6278, 7348, 10568, 12532
Fragment Lengths Match Score
0.75
Annotations  
Browse
LE_HBa0166A02 has no browsable sequence annotations
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 and  bp
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End Sequences

e.g. crystallin
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Map
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 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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