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Clone hba-155i21

Clone and library  
Clone
Clone name
hba-155i21
LE_HBa0155I21
C10HBa0155I21
P155I21
Clone type
BAC
Contamination
none
Estimated length
112,247
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg4767 : [coherent], 1 members:
C10HBa0155I21
Marker matches - overgo what's this? 
Plausible matches Additional Info
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
FISH map 
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
450-03 1CompositeFluoresencePhase79.7%
450-04a 1CompositeFluorescencePhase77.1%
450-04b 1CompositeFluorescencePhase74.8%
450-07 1CompositeFluorescencePhase75.9%
450-09 1CompositeFluorescencePhase78.0%
450-10 1CompositeFluorescencePhase73.3%
450-11 1CompositeFluorescencePhase81.9%
450-13 1CompositeFluorescencePhase77.4%
450-14 1CompositeFluorescencePhase72.3%
450-15 1CompositeFluorescencePhase78.1%
450-16 1CompositeFluorescencePhase77.8%
450-18 1CompositeFluorescencePhase72.7%
450-19 1CompositeFluorescencePhase79.3%
450-20 1CompositeFluorescencePhase76.1%
450-22 1CompositeFluorescencePhase78.5%
450-23 1CompositeFluorescencePhase78.9%
450-26 1CompositeFluorescencePhase76.3%
450-27 1CompositeFlourescencePhase78.3%
450-28 1CompositeFluorescencePhase76.6%
450-29 1CompositeFlourescencePhase75.8%
450-31 1CompositeFluorescencePhase77.8%
450-34 1CompositeFluorescencePhase73.8%
450-40 1CompositeFluorescencePhase76.8%
Mean±sd76.8%±2.3%

Given an estimated length of 4.8µm for chromosome 10P and the mean percentage above, this BAC is approximately 3.7µm±0.1µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 10 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 10
HTGS phase
3 - finished
Sequencing Status
in_progress
Sequencing Organization
Uploaded by account 'manual'
Full Sequence
136,169 bp
C10HBa0155I21.5
AC233124.13 (GenBank)
[View]
[Download fasta]
[Download full submission] (0.09 MB)
End Sequences
Warnings
none
FTP
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (21)
2410, 2565, 2898, 3017, 3049, 3352, 3352, 3422, 3422, 4426, 5319, 5386, 5573, 5968, 6143, 6854, 8193, 8351, 8880, 9469, 10198
HindIII in silico (34)
1021, 1174, 1458, 1493, 1524, 1575, 1635, 1650, 1691, 1934, 1944, 2025, 2211, 2451, 2596, 2905, 3018, 3087, 3333, 3366, 3442, 3456, 4387, 4998, 5087, 5272, 5631, 5861, 6777, 7991, 8201, 8752, 9260, 9732
Fragment Lengths Match Score
0.74
Annotations  
Browse
LE_HBa0155I21 has no browsable sequence annotations
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