Clone hba-165k22

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Clone
Clone name
hba-165k22
LE_HBa0165K22
C02HBa0165K22
P165K22
Clone type
BAC
Contamination
none
Estimated length
96,966
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg3967 : [coherent], 1 members:
C02HBa0165K22
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
T0702Tomato-EXPEN 2000plate 1F9
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 2
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 2 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 2
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Korea Research Institute of Bioscience and Biotechnology
Full Sequence
135,795 bp
C02HBa0165K22.1
AC215406.1 (GenBank) 		[View]
[Download fasta]
[Download full submission] (196.20 MB)
End Sequences
Warnings
  • sequence length 135,795 is 40.0% different from estimated length 96,966
 FTP
Chromosome 2 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (25)
1034, 1135, 1557, 1557, 1662, 1987, 2101, 2297, 2435, 2462, 2649, 2756, 2884, 2884, 3175, 3446, 3813, 3947, 4019, 4907, 5491, 7011, 8705, 8864, 14188
HindIII in silico (39)
1001, 1005, 1009, 1117, 1127, 1289, 1314, 1417, 1542, 1549, 1648, 1894, 1958, 1972, 2073, 2077, 2160, 2299, 2302, 2428, 2437, 2456, 2639, 2738, 2856, 2899, 3169, 3466, 3844, 3958, 4071, 4698, 5159, 5183, 6963, 7055, 8716, 8866, 13970
Fragment Lengths Match Score
0.81
Annotations  
Browse
LE_HBa0165K22 has no browsable sequence annotations
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End Sequences

e.g. crystallin
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Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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