Clone hba-157b13

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Clone
Clone name
hba-157b13
LE_HBa0157B13
C00HBa0157B13
P157B13
Clone type
BAC
Contamination
none
Estimated length
127,373
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this? 
Plausible matches Additional Info
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
FISH map 
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
856-03 1CompositeFluorescencePhase21.7%
856-12 1CompositeFluorescencePhase19.9%
856-17 1CompositeFluorescencePhase23.9%
856-22b 1CompositeFluorescencePhase24.4%
856-25 1CompositeFluorescencePhase22.2%
856-27 1CompositeFluorescencePhase24.5%
856-35 1CompositeFluorescencePhase25.2%
Mean±sd23.1%±1.9%

Given an estimated length of 15.7µm for chromosome 3Q and the mean percentage above, this BAC is approximately 3.6µm±0.3µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL Mapping 
Assigned to project
Italy
IL-mapped to chromosome
-
IL-mapped to IL segment
-
IL mapping notes
-
Sequencing  
This clone is registered to be sequenced, but has not been successfully mapped to any chromosome.

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Sequencing Project
Chromosome unmapped
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Wellcome Trust Sanger Institute
Full Sequence
76,592 bp
C00HBa0157B13.2
CU466553.4 (GenBank)
[View]
[Download fasta]
[Download full submission] (0.05 MB)
End Sequences
Warnings
none
FTP
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (24)
1642, 1987, 2028, 2028, 2705, 2909, 2909, 2972, 3185, 3441, 3441, 5816, 6273, 6273, 6527, 6527, 6905, 6905, 7305, 7927, 8360, 9133, 9801, 10374
HindIII in silico (22)
1052, 1107, 1119, 1140, 1183, 1613, 2000, 2260, 2345, 2577, 2681, 3170, 3301, 3419, 3644, 4246, 5051, 5510, 5922, 6651, 6908, 7630
Fragment Lengths Match Score
0.88
Annotations  
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LE_HBa0157B13 has no browsable sequence annotations
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