Clone hba-179k9

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Clone
Clone name
hba-179k9
LE_HBa0179K09
C07HBa0179K09
P179K09
Clone type
BAC
Contamination
none
Estimated length
98,166
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg3073 : [coherent], 3 members:
LE_HBa0007L06, C07HBa0179K09, LE_HBa0257O04
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
T0876Tomato-EXPEN 2000plate 11E4
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 7
FISH map 
View on FISH map chromosome 7
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
567-02 1CompositeFluorescencePhase100.0%
567-03 1CompositeFluorescencePhase100.0%
567-06 1CompositeFluorescencePhase100.0%
567-07 1CompositeFluorescencePhase100.0%
567-08 1CompositeFluorescencePhase98.7%
567-11 1CompositeFluorescencePhase97.2%
567-12 1CompositeFluorescencePhase98.0%
567-13 1CompositeFluorescencePhase99.0%
567-14 1CompositeFluorescencePhase96.8%
567-15 1CompositeFluorescencePhase97.5%
567-16 1CompositeFluorescencePhase98.2%
567-17 1CompositeFluorescencePhase94.6%
567-18 1CompositeFluorescencePhase97.2%
567-19 1CompositeFluorescencePhase98.8%
567-20 1CompositeFluorescencePhase96.9%
567-21 1CompositeFluorescencePhase99.1%
567-22 1CompositeFluorescencePhase97.8%
567-26 1CompositeFluorescencePhase97.5%
567-28 1CompositeFluorescencePhase96.6%
567-30 1CompositeFluorescencePhase96.9%
567-31 1CompositeFluorescencePhase98.1%
567-34 1CompositeFluorescencePhase98.2%
567-36 1CompositeFluorescencePhase98.4%
567-38 1CompositeFluorescencePhase96.5%
567-41 1CompositeFluorescencePhase98.5%
567-42 1CompositeFluorescencePhase99.2%
567-44 1CompositeFluorescencePhase95.5%
567-54 1CompositeFluorescencePhase99.1%
Mean±sd98.0%±1.4%

Given an estimated length of 10.8µm for chromosome 7Q and the mean percentage above, this BAC is approximately 10.6µm±0.1µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 7 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 7
HTGS phase
none
Sequencing Status
complete
Sequencing Organization
not recorded
Full Sequence
107,788 bp
C07HBa0179K09.1
[View]
[Download fasta]
[Download full submission] (564.88 MB)
End Sequences
Warnings
none
FTP
Chromosome 7 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (21)
1117, 1335, 1540, 1957, 2045, 2689, 2898, 2898, 2965, 3191, 3191, 3454, 3454, 5840, 6292, 6592, 8005, 8452, 9341, 10091, 10819
HindIII in silico (26)
1114, 1299, 1324, 1515, 1561, 1649, 1932, 1960, 2025, 2047, 2712, 2899, 2901, 2978, 3188, 3229, 3455, 3488, 5468, 6118, 6513, 7869, 8353, 9112, 9794, 10468
Fragment Lengths Match Score
0.89
Annotations  
Browse
LE_HBa0179K09 has no browsable sequence annotations
Download
 
User comments [Add comment] 
Posted by Lukas Mueller (curator) on 2006-09-07 09:22:19 Delete  
This BAC was sequenced by the chromosome 5 project in India. Subsequently, this seed BAC, HBa0179K09, and an extension BAC, SL_MboI0077G20, were both located on chromosome 7 using the inbred lines and both have been attributed to the chromosome 7 project.
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IL Bin Mapping
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