Clone hba-168b23

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Clone
Clone name
hba-168b23
LE_HBa0168B23
C11HBa0168B23
P168B23
Clone type
BAC
Contamination
none
Estimated length
121,088
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg2742 : [coherent], 1 members:
C11HBa0168B23
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
P47Tomato-EXPEN 2000plate 3A3
Additional Info
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
FISH map 
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
327-03 1CompositeFluorescencePhase96.5%
327-05 1CompositeFluorescencePhase95.8%
327-06 1CompositeFluorescencePhase95.8%
327-07 1CompositeFluorescencePhase95.5%
327-09 1CompositeFluorescencePhase96.2%
327-10 1CompositeFluorescencePhase100.0%
327-13 1CompositeFluorescencePhase96.4%
327-14 1CompositeFluorescencePhase100.0%
327-15 1CompositeFluorescencePhase95.7%
327-17 1CompositeFluorescencePhase98.4%
327-21 1CompositeFluorescencePhase96.8%
327-34 1CompositeFluorescencePhase96.6%
327-35 1CompositeFluorescencePhase98.4%
327-36 1CompositeFluorescencePhase100.0%
327-37 1CompositeFluorescencePhase100.0%
327-38 1CompositeFluorescencePhase96.0%
327-39 1CompositeFluorescencePhase94.7%
327-40 1CompositeFluorescencePhase97.2%
Mean±sd97.2%±1.8%

Given an estimated length of 6.5µm for chromosome 11P and the mean percentage above, this BAC is approximately 6.3µm±0.1µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 11 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 11
HTGS phase
3 - finished
Sequencing Status
in_progress
Sequencing Organization
Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences
Full Sequence
131,679 bp
C11HBa0168B23.2
AC212438.2 (GenBank)
[View]
[Download fasta]
[Download full submission] (181.15 MB)
End Sequences
Warnings
none
FTP
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (30)
1316, 1692, 1803, 2031, 2031, 2124, 2212, 2225, 2307, 2328, 2359, 2803, 2844, 3094, 3094, 3288, 3400, 4049, 4083, 4510, 4934, 5075, 5243, 5243, 5610, 5844, 5910, 7564, 10593, 11479
HindIII in silico (34)
1039, 1063, 1073, 1298, 1315, 1499, 1683, 1788, 2017, 2044, 2114, 2233, 2238, 2316, 2365, 2812, 2866, 3072, 3124, 3319, 3425, 4070, 4105, 4473, 4789, 4850, 4953, 5025, 5281, 5549, 5641, 7578, 10444, 11205
Fragment Lengths Match Score
0.92
Annotations  
Browse
LE_HBa0168B23 has no browsable sequence annotations
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