Clone hba-29f16

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Clone
Clone name
hba-29f16
LE_HBa0029F16
C04HBa0029F16
P029F16
Clone type
BAC
Contamination
none
Estimated length
99,065
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg256 : [coherent], 3 members:
LE_HBa0314A17, C04HBa0029F16, LE_HBa0063A22
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
CT157Tomato-EXPEN 2000plate 8F5
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLAST 
MarkerEvalueIdentity %ScoreParams
CT1571698.00evalue cutoff: 1e-10; min len = 25; min identity=0.96
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 4
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 4 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 4
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
not recorded
Full Sequence
118,288 bp
C04HBa0029F16.1
CU302232.4 (GenBank) 		[View]
[Download fasta]
[Download full submission] (0.07 MB)
End Sequences
Warnings
none
FTP
Chromosome 4 Sequencing repository (FTP)
Chromosome Assembly
View on AGP map chromosome 4
  
Restriction Fragments
HindIII in vitro (28)
1016, 1016, 1075, 1075, 1252, 1488, 1653, 1853, 1917, 2171, 2301, 2422, 2816, 2853, 3113, 3126, 3225, 3250, 3301, 3749, 3749, 6119, 6232, 6452, 6452, 7498, 8027, 9864
HindIII in silico (32)
1006, 1083, 1242, 1476, 1485, 1501, 1558, 1646, 1657, 1836, 1900, 2174, 2316, 2449, 2808, 2883, 3101, 3108, 3179, 3223, 3243, 3310, 3358, 3758, 3839, 5869, 6076, 6348, 6446, 7523, 8017, 9812
Fragment Lengths Match Score
0.93
Annotations  
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LE_HBa0029F16 has no browsable sequence annotations
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End Sequences

e.g. crystallin
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Map
Map position
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Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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