Clone hba-243a15

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Clone
Clone name
hba-243a15
LE_HBa0243A15
P243A15
Clone type
BAC
Contamination
none
Estimated length
93,997
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg1985 : [coherent], 1 members:
LE_HBa0243A15
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
TG600Tomato-EXPEN 2000plate 14E8
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLAST 
MarkerEvalueIdentity %ScoreParams
TG60011025.00evalue cutoff: 1e-10; min len = 25; min identity=0.96
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome
FISH map 
View on FISH map chromosome 1
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
712-03 1CompositeFluorescencePhase73.8%
712-07 1CompositeFluorescencePhase77.8%
712-08 1CompositeFluorescencePhase77.4%
712-11 1CompositeFluorescencePhase75.8%
712-20 1CompositeFluorescencePhase77.1%
712-29 1CompositeFluorescencePhase76.7%
712-32 1CompositeFluorescencePhase75.7%
712-38 1CompositeFluorescencePhase75.1%
712-44 1CompositeFluorescencePhase75.9%
712-45 1CompositeFluorescencePhase79.1%
712-46 1CompositeFluorescencePhase79.1%
712-50 1CompositeFluorescencePhase75.9%
712-53 1CompositeFluorescencePhase76.4%
712-55 1CompositeFluorescencePhase78.1%
Mean±sd76.7%±1.5%

Given an estimated length of 20.1µm for chromosome 1Q and the mean percentage above, this BAC is approximately 15.4µm±0.3µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is not assigned to any sequencing project.
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Sequencing Project
none
HTGS phase
none
Sequencing Status
none
Sequencing Organization
not recorded
Full Sequence
Sequence not available.
End Sequences
Warnings
none
FTP
Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (22)
1507, 1577, 1628, 2008, 2058, 2246, 2359, 2476, 2751, 2871, 3300, 3456, 3456, 3888, 4200, 4670, 5269, 5639, 7656, 8354, 8354, 14274
Annotations  
Browse
LE_HBa0243A15 has no browsable sequence annotations
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End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
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 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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