Clone hba-14a17

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Clone
Clone name
hba-14a17
LE_HBa0014A17
C03HBa0014A17
P014A17
Clone type
BAC
Contamination
none
Estimated length
105,654
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg3138 : [coherent], 3 members:
C03HBa0014A17, LE_HBa0238F22, LE_HBa0247L13
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
TG59Tomato-EXPEN 2000plate 14D9
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manual 
Marker
HBa14A17
Publication
unpublished
Submitted by
Lukas Mueller (Boyce Thompson Institute for Plant Research)
Comment
Manual associations of BACs with mapped BAC ends. Mapping by Yimin Xu, Cornell University
Physical map (from marker matches) 
View on physical map chromosome 3
FISH map 
View on FISH map chromosome 3
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
169-04 1CompositeFluorescencePhase13.8%
169-05 1CompositeFluorescencePhase16.2%
169-06 1CompositeFluorescencePhase14.7%
169-13 1CompositeFluorescencePhase16.7%
169-22 1CompositeFluorescencePhase13.9%
169-23 1CompositeFluorescencePhase15.0%
169-29 1CompositeFluorescencePhase14.0%
169-33 1CompositeFluorescencePhase15.7%
169-34 1CompositeFluorescencePhase17.1%
169-35 1CompositeFluorescencePhase15.6%
169-36 1CompositeFluorescencePhase16.4%
169-38 1CompositeFluorescencePhase15.3%
169-39 1CompositeFluorescencePhase14.1%
169-41 1CompositeFluorescencePhase15.4%
Mean±sd15.3%±1.1%

Given an estimated length of 15.7µm for chromosome 3Q and the mean percentage above, this BAC is approximately 2.4µm±0.2µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 3 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 3
HTGS phase
none
Sequencing Status
in_progress
Sequencing Organization
not recorded
Full Sequence
Sequence not available.
End Sequences
Warnings
none
FTP
Chromosome 3 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (24)
1537, 1537, 1908, 2039, 2039, 2127, 2298, 2298, 2410, 2658, 2748, 2748, 2861, 3542, 3946, 4372, 4372, 4860, 5732, 5913, 6992, 11421, 11421, 13875
Annotations  
Browse
LE_HBa0014A17 has no browsable sequence annotations
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temporarily unavailable
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 and  bp
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e.g. AP009318.1 or AP009318
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Annotations
End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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