Clone hba-26c13

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Clone
Clone name
hba-26c13
LE_HBa0026C13
C12HBa0026C13
P026C13
Clone type
BAC
Contamination
none
Estimated length
151,214
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg1958 : [coherent], 6 members:
C12HBa0026C13, C12HBa0052A03, LE_HBa0069O12, LE_HBa0175H08, C12HBa0239O15, C12HBa0271P13
Marker matches - overgo what's this?None
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches)Not on Physical Map
FISH map 
View on FISH map chromosome 12
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
441-01 1CompositeFluorescencePhase95.3%
441-02 1CompositeFluorescencePhase92.3%
441-05 1CompositeFluorescencePhase90.8%
441-10 1CompositeFluorescencePhase96.6%
441-22 1CompositeFluorescencePhase96.4%
441-30 1CompositeFluorescencePhase91.8%
441-32 1CompositeFluorescencePhase97.2%
441-34 1CompositeFluorescencePhase94.7%
441-35 1CompositeFluorescencePhase94.4%
441-37 1CompositeFluorescencePhase94.0%
441-41a 1CompositeFluorescencePhase92.1%
441-41b 1CompositeFluorescencePhase94.3%
441-45 1CompositeFluorescencePhase94.3%
441-48 1CompositeFluorescencePhase92.3%
441-49a 1CompositeFluorescencePhase94.4%
441-49b 1CompositeFluorescencePhase89.4%
441-53 1CompositeFluorescencePhase92.6%
Mean±sd93.7%±2.1%

Given an estimated length of 6.8µm for chromosome 12P and the mean percentage above, this BAC is approximately 6.4µm±0.1µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 12 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 12
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
not recorded
Full Sequence
174,433 bp
C12HBa0026C13.1
AC209585.1 (GenBank) 		[View]
[Download fasta]
[Download full submission] (313.75 MB)
End Sequences
Warnings
none
FTP
Chromosome 12 Sequencing repository (FTP)
Chromosome Assembly
View on AGP map chromosome 12
  
Restriction Fragments
HindIII in vitro (37)
1223, 1341, 1546, 1648, 1985, 1985, 2068, 2189, 2236, 2242, 2342, 2566, 2677, 2737, 2737, 2960, 3043, 3053, 3158, 3435, 3516, 3516, 3606, 3800, 4116, 4248, 4440, 4558, 4897, 5815, 6674, 7150, 7150, 8379, 8658, 10424, 13096
HindIII in silico (44)
1076, 1088, 1229, 1339, 1340, 1550, 1667, 1869, 1970, 1971, 2045, 2184, 2254, 2255, 2353, 2585, 2688, 2734, 2758, 2777, 2954, 3035, 3058, 3092, 3160, 3249, 3462, 3525, 3548, 3642, 3849, 4157, 4262, 4407, 4487, 4750, 5510, 6589, 7082, 7167, 8207, 8473, 10206, 12449
Fragment Lengths Match Score
0.91
Annotations  
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LE_HBa0026C13 has no browsable sequence annotations
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