Clone hba-88l2

Clone and library  
Clone
Clone name
hba-88l2
LE_HBa0088L02
C01HBa0088L02
P088L02
Clone type
BAC
Contamination
none
Estimated length
97,347
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg877 : [coherent], 3 members:
LE_HBa0068G02, C01HBa0088L02, LE_HBa0251C02
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
T1306Tomato-EXPEN 2000plate 3F6
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 1
FISH map 
View on FISH map chromosome 1
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
258-08 1CompositeFluorescencePhase99.3%
258-10 1CompositeFluorescencePhase100.0%
258-11 1CompositeFluorescencePhase98.5%
258-12 1CompositeFluorescencePhase98.7%
258-15 1CompositeFluorescencePhase100.0%
258-17 1CompositeFluorescencePhase100.0%
258-20 1CompositeFluorescencePhase99.3%
258-21 1CompositeFluorescencePhase100.0%
258-23 1CompositeFluorescencePhase98.8%
258-29 1CompositeFluorescencePhase98.5%
258-31 1CompositeFluorescencePhase100.0%
258-47 1CompositeFluorescencePhase100.0%
258-48 1CompositeFluorescencePhase100.0%
258-49 1CompositeFluorescencePhase100.0%
Mean±sd99.5%±0.6%

Given an estimated length of 20.1µm for chromosome 1Q and the mean percentage above, this BAC is approximately 20.0µm±0.1µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL Mapping 
Assigned to project
USA
IL-mapped to chromosome
-
IL-mapped to IL segment
-
IL mapping notes
-
Sequencing  
This clone is being sequenced by the Chromosome 1 Sequencing Project. (View projects)
Log in as a curator or sequencer to edit this clone's registry information.
Sequencing Project
Chromosome 1
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
not recorded
Full Sequence
111,737 bp
C01HBa0088L02.2
AC171726.2 (GenBank) 		[View]
[Download fasta]
[Download full submission] (193.30 MB)
End Sequences
Warnings
none
FTP
Chromosome 1 Sequencing repository (FTP)
Chromosome Assembly
View on AGP map chromosome 1
  
Restriction Fragments
HindIII in vitro (20)
1577, 1626, 1786, 2224, 2345, 2456, 2727, 3523, 3561, 3722, 4932, 5449, 6207, 6207, 6383, 7178, 7448, 8967, 9160, 9869
HindIII in silico (23)
1091, 1096, 1238, 1571, 1766, 2224, 2356, 2464, 2731, 3579, 3776, 4733, 5148, 5919, 6003, 6011, 6211, 6259, 7126, 7391, 8904, 9067, 9788
Fragment Lengths Match Score
0.91
Annotations  
Browse
LE_HBa0088L02 has no browsable sequence annotations
Download
 
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Seq. Center Reported Status
Estimated Length
 and  bp
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e.g. AP009318.1 or AP009318
Sequencing on Chromosome
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Annotations
End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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