Clone hba-60a6

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Clone
Clone name
hba-60a6
LE_HBa0060A06
C01HBa0060A06
P060A06
Clone type
BAC
Contamination
none
Estimated length
151,190
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg668 : [coherent], 15 members:
LE_HBa0035J07, C01HBa0060A06, LE_HBa0114N14, LE_HBa0017M12, LE_HBa0141O05, LE_HBa0152B04, LE_HBa0156M12, LE_HBa0195C20, LE_HBa0197A14, LE_HBa0197J06, LE_HBa0213G13, LE_HBa0242I01, LE_HBa0245J07, LE_HBa0253J17, LE_HBa0256M10
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
SSR61Tomato-EXPEN 2000plate 11A1
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 1
FISH map 
View on FISH map chromosome 10
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
549-03 1CompositeFluorescencePhase92.0%
549-05 1CompositeFluorescencePhase95.7%
553-05 1CompositeFluorescencePhase91.6%
553-09 1CompositeFluorescencePhase89.3%
553-14 1CompositeFluorescencePhase90.7%
549-18 1CompositeFluorescencePhase90.8%
553-26 1CompositeFluorescencePhase92.0%
549-30 1CompositeFluorescencePhase90.8%
549-32 1CompositeFluorescencePhase94.9%
549-33 1CompositeFluorescencePhase94.4%
549-34 1CompositeFluorescencePhase88.4%
549-35 1CompositeFluorescencePhase93.8%
549-37 1CompositeFluorescencePhase90.7%
549-41 1CompositeFluorescencePhase92.7%
553-41 1CompositeFluorescencePhase91.8%
549-42 1CompositeFluorescencePhase90.2%
549-43 1CompositeFluorescencePhase88.5%
549-46 1CompositeFluorescencePhase93.0%
549-51 1CompositeFluorescencePhase89.7%
Mean±sd91.6%±2.1%

Given an estimated length of 4.8µm for chromosome 10P and the mean percentage above, this BAC is approximately 4.4µm±0.1µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 1 Sequencing Project. (View projects)
Log in as a curator or sequencer to edit this clone's registry information.
Sequencing Project
Chromosome 1
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Uploaded by account 'manual'
Full Sequence
164,867 bp
C01HBa0060A06.1
AC239470.1 (GenBank) 		[View]
[Download fasta]
[Download full submission] (0.10 MB)
End Sequences
Warnings
none
FTP
Chromosome 1 Sequencing repository (FTP)
Chromosome Assembly
View on AGP map chromosome 1
  
Restriction Fragments
HindIII in vitro (41)
1269, 1406, 1406, 1498, 1555, 1555, 1693, 1693, 1817, 1837, 1988, 2051, 2190, 2298, 2541, 2541, 2541, 2712, 2732, 3044, 3302, 3403, 3403, 3645, 3737, 3849, 4123, 4123, 4338, 5099, 5099, 5241, 5379, 5936, 6102, 6285, 6285, 6457, 7318, 8435, 9264
HindIII in silico (44)
1005, 1042, 1079, 1084, 1264, 1379, 1412, 1501, 1552, 1689, 1808, 1827, 1969, 2038, 2194, 2326, 2563, 2566, 2570, 2592, 2728, 2761, 3056, 3314, 3394, 3437, 3673, 3802, 3893, 4158, 4166, 4362, 4858, 4910, 4979, 5090, 5651, 5851, 6094, 6154, 6362, 7278, 8352, 9138
Fragment Lengths Match Score
0.95
Annotations  
Browse
LE_HBa0060A06 has no browsable sequence annotations
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End Sequences

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IL Bin Mapping
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 Verification

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