Clone hba-95c18

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Clone
Clone name
hba-95c18
LE_HBa0095C18
C07HBa0095C18
P095C18
Clone type
BAC
Contamination
none
Estimated length
112,931
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg3594 : [coherent], 4 members:
C07HBa0007H24, C07HBa0095C18, C07HBa0111F22, LE_HBa0168F12
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
U146437Tomato-EXPEN 2000plate 13D6
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 7
FISH map 
View on FISH map chromosome 7
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
639-01 1CompositeFluorescencePhase98.7%
639-02 1CompositeFluorescencePhase95.4%
639-03 1CompositeFluorescencePhase96.1%
639-04 1CompositeFluorescencePhase96.4%
639-16 1CompositeFluorescencePhase98.7%
639-19 1CompositeFluorescencePhase98.1%
639-20 1CompositeFluorescencePhase96.6%
639-21 1CompositeFluorescencePhase96.0%
339-31 1CompositeFluorescencePhase95.4%
639-31 1CompositeFluorescencePhase97.1%
339-32 1CompositeFluorescencePhase100.0%
339-33 1CompositeFluorescencePhase97.1%
339-34 1CompositeFluorescencePhase100.0%
639-34 1CompositeFluorescencePhase91.2%
339-35 1CompositeFluorescencePhase100.0%
339-36 1CompositeFluorescencePhase100.0%
639-37 1CompositeFluorescencePhase99.3%
339-38 1CompositeFluorescencePhase97.0%
639-38a 1CompositeFluorescencePhase94.6%
639-38b 1CompositeFluorescencePhase99.4%
339-39 1CompositeFluorescencePhase95.9%
339-40 1CompositeFluorescencePhase100.0%
639-40a 1CompositeFluorescencePhase100.0%
639-40b 1CompositeFluorescencePhase96.7%
339-41 1CompositeFluorescencePhase100.0%
639-44 1CompositeFluorescencePhase94.4%
639-46 1CompositeFluorescencePhase99.4%
639-48 1CompositeFluorescencePhase100.0%
Mean±sd97.6%±2.3%

Given an estimated length of 5.8µm for chromosome 7P and the mean percentage above, this BAC is approximately 5.7µm±0.1µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 7 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 7
HTGS phase
none
Sequencing Status
complete
Sequencing Organization
not recorded
Full Sequence
Sequence not available.
End Sequences
Warnings
none
FTP
Chromosome 7 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (23)
2196, 2396, 2528, 2713, 2967, 2989, 3077, 3235, 3376, 3463, 3566, 3566, 3932, 3932, 3999, 6143, 6143, 6457, 7115, 7608, 8808, 10281, 12441
Annotations  
Browse
LE_HBa0095C18 has no browsable sequence annotations
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 More Criteria

Seq. Center Reported Status
Estimated Length
 and  bp
GenBank Accession (version insensitive)
e.g. AP009318.1 or AP009318
Sequencing on Chromosome
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Annotations
End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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