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Clone hba-40f8

Clone and library  
Clone
Clone name
hba-40f8
LE_HBa0040F08
C06HBa0040F08
P040F08
Clone type
BAC
Contamination
none
Estimated length
82,041
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg4238 : [coherent], 1 members:
C06HBa0040F08
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
CD67Tomato-EXPEN 2000plate 2E2
Additional Info
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 6 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 6
HTGS phase
1 - fragmented, unordered
Sequencing Status
complete
Sequencing Organization
The Centre for BioSystems Genomics
Full Sequence
118,384 bp
C06HBa0040F08.1
AC219207.1 (GenBank)
[View]
[Download fasta]
[Download full submission] (210.33 MB)
End Sequences
Warnings
  • sequence is not finished to HTGS3
  • sequence length 118,384 is 44.3% different from estimated length 82,041
FTP
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (18)
1057, 1152, 1174, 2644, 2950, 3156, 3221, 4089, 4089, 4543, 5214, 5794, 6054, 6302, 6733, 6864, 7215, 9790
HindIII in silico (33)
1051, 1053, 1110, 1141, 1157, 1165, 1179, 1231, 1295, 1343, 1504, 1539, 2655, 2932, 3122, 3199, 3260, 3761, 4063, 4082, 4134, 4136, 4138, 4142, 4473, 4936, 5465, 5794, 6045, 6109, 6673, 6879, 7184
Fragment Lengths Match Score
0.75
Annotations  
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LE_HBa0040F08 has no browsable sequence annotations
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