Clone hba-55e23
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Fingerprint Contig Builds (FPC) |
- Tomato FPC (AGI 2005)
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ctg4104 : [coherent], 3 members:
LE_HBa0001J06, C01HBa0055E23, LE_HBa0066A04
Marker matches - overgo what's this? |
Plausible matches
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Additional Info | ||||||||
Conflicted matches
None
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Marker matches - BLAST |
Marker | Evalue | Identity % | Score | Params |
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cLPT-5-K21 | 1e-107 | 0.985 | 383.00 | evalue cutoff: 1e-10; min len = 25; min identity=0.96 |
Marker matches - manual |
Physical map (from marker matches) |
FISH map |
FISH images |
SC Spread ID | Images | Distance from centromere (percentage of arm length) | ||
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692-01 1 | Composite | Fluorescence | Phase | 35.5% |
692-09 1 | Composite | Fluorescence | Phase | 35.1% |
692-13 1 | Composite | Fluorescence | Phase | 35.5% |
692-14 1 | Composite | Fluorescence | Phase | 36.7% |
692-20 1 | Composite | Fluorescence | Phase | 36.3% |
692-21 1 | Composite | Fluorescence | Phase | 35.3% |
692-27 1 | Composite | Fluorescence | Phase | 36.7% |
692-28 1 | Composite | Fluorescence | Phase | 33.0% |
692-33 1 | Composite | Fluorescence | Phase | 35.2% |
692-34 1 | Composite | Fluorescence | Phase | 35.0% |
692-36 1 | Composite | Fluorescence | Phase | 34.0% |
692-37 1 | Composite | Fluorescence | Phase | 34.6% |
692-46 1 | Composite | Fluorescence | Phase | 31.8% |
692-50 1 | Composite | Fluorescence | Phase | 32.6% |
692-51 1 | Composite | Fluorescence | Phase | 33.6% |
692-58 1 | Composite | Fluorescence | Phase | 36.6% |
Mean±sd | 34.8%±1.5% |
Given an estimated length of 20.1µm for chromosome 1Q and the mean percentage above, this BAC is approximately 7.0µm±0.3µm from the chromosome centromere.
1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL Mapping |
Assigned to project
USA
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IL-mapped to chromosome
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IL-mapped to IL segment
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IL mapping notes
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This clone is being sequenced by the Chromosome 1 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 1
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HTGS phase
3 - finished
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Sequencing Status
in_progress
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Sequencing Organization
Uploaded by account 'manual'
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Full Sequence
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End Sequences
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Warnings
none
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FTP | ||
Chromosome Assembly |
Restriction Fragments
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Browse
LE_HBa0055E23 has no browsable sequence annotations
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Download
temporarily unavailable
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