Clone hba-119d16

Clone and library  
Clone
Clone name
hba-119d16
LE_HBa0119D16
C11HBa0119D16
P119D16
Clone type
BAC
Contamination
none
Estimated length
116,905
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg142 : [coherent], 12 members:
LE_HBa0235M22, LE_HBa0238L19, LE_HBa0287F05, LE_HBa0033K21, LE_HBa0047M18, LE_HBa0065E22, LE_HBa0070D14, C11HBa0119D16, LE_HBa0129P04, LE_HBa0163L12, LE_HBa0200A13, LE_HBa0294F14
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
C2_At5g12200Tomato-EXPEN 2000plate 13F11
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 11
FISH map 
View on FISH map chromosome 11
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
165-11 1CompositeFluorescencePhase55.9%
165-16 1CompositeFluorescencePhase56.6%
165-19 1CompositeFluorescencePhase56.8%
165-30 1CompositeFluorescencePhase56.5%
165-34 1CompositeFluorescencePhase57.1%
Mean±sd56.6%±0.5%

Given an estimated length of 8.0µm for chromosome 11Q and the mean percentage above, this BAC is approximately 4.5µm±0.0µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 11 Sequencing Project. (View projects)
Log in as a curator or sequencer to edit this clone's registry information.
Sequencing Project
Chromosome 11
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Cornell University
Full Sequence
117,316 bp
C11HBa0119D16.2
AC171735.3 (GenBank) 		[View]
[Download fasta]
[Download full submission] (216.61 MB)
End Sequences
Warnings
none
FTP
Chromosome 11 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (27)
1485, 1624, 1661, 1797, 1902, 2081, 2284, 2540, 2607, 2981, 3068, 3352, 3545, 3599, 3665, 3728, 3777, 4526, 4898, 5216, 6034, 6034, 7067, 7516, 7890, 9853, 12175
HindIII in silico (29)
1099, 1144, 1177, 1215, 1279, 1481, 1624, 1668, 1788, 1879, 2046, 2280, 2537, 2645, 2967, 3072, 3379, 3606, 3709, 3837, 4444, 4704, 5662, 5797, 7072, 7328, 7804, 9689, 12102
Fragment Lengths Match Score
0.94
Annotations  
Browse
LE_HBa0119D16 has no browsable sequence annotations
Download
 
User commentsNone[Add comment] 
Search again  
Genomic Clone Search Select a genomic clone at random

full names, partial names, or lists of both

 More Criteria

Seq. Center Reported Status
Estimated Length
 and  bp
GenBank Accession (version insensitive)
e.g. AP009318.1 or AP009318
Sequencing on Chromosome
Show Only Clones With







Annotations
End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

Related Links: