### Clone hba-177f12

 Clone and library
Clone
Clone name
hba-177f12
LE_HBa0177F12
C02HBa0177F12
P177F12
Clone type
BAC
Contamination
none
Estimated length
120,583
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
 Physical mapping
 Fingerprint Contig Builds (FPC)
Tomato FPC (AGI 2005)
ctg1810 : [coherent], 5 members:
C02HBa0051O23, C02HBa0131F11, C02HBa0177F12, C02HBa0233G16, C02HBa0265A18
 Marker matches - overgo what's this?
Plausible matches Additional Info
Conflicted matches
None

 Marker matches - BLAST None
 Marker matches - manual None
 Physical map (from marker matches)
 FISH map
 FISH images
SC Spread IDImagesDistance from centromere
(percentage of arm length)
7-10 1CompositeFluorescencePhase100.0%
7-11 1CompositeFluorescencePhase100.0%
7-12 1CompositeFluorescencePhase98.5%
7-4 1CompositeFluorescencePhase100.0%
7-5 1CompositeFluorescencePhase100.0%
7-7 1CompositeFluorescencePhase100.0%
7-8 1CompositeFluorescencePhase100.0%
Mean±sd99.8%±0.6%

Given an estimated length of 18.9µm for chromosome 2Q and the mean percentage above, this BAC is approximately 18.9µm±0.1µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
 IL Mapping None
 Sequencing
This clone is being sequenced by the Chromosome 2 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 2
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Korea Research Institute of Bioscience and Biotechnology
Full Sequence
End Sequences
Warnings
none
FTP
Chromosome Assembly
this clone is not part of a chromosome assembly

Restriction Fragments
 HindIII in vitro (30) 1078, 1278, 1542, 1699, 1699, 1728, 1842, 1969, 2163, 2441, 2441, 2801, 2978, 3014, 3184, 3184, 3492, 3813, 3961, 4087, 4645, 5224, 6124, 6290, 6339, 6735, 6844, 8583, 8767, 10638 HindIII in silico (35) 1077, 1272, 1542, 1677, 1688, 1718, 1823, 1950, 2160, 2188, 2437, 2463, 2820, 2970, 3035, 3178, 3185, 3499, 3821, 3839, 3876, 3966, 4029, 4130, 4545, 4996, 5903, 6068, 6153, 6647, 6796, 8513, 8843, 10373, 10502 Fragment Lengths Match Score 0.92
 Annotations
Browse
LE_HBa0177F12 has no browsable sequence annotations