Clone hba-182e16

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Clone
Clone name
hba-182e16
LE_HBa0182E16
C00HBa0182E16
P182E16
Clone type
BAC
Contamination
none
Estimated length
82,611
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
T0688Tomato-EXPEN 2000plate 7C5
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome unmapped
FISH mapNot on FISH map
FISH imagesNone
IL Mapping 
Assigned to project
Italy
IL-mapped to chromosome
1
IL-mapped to IL segment
-
IL mapping notes
both ends mapped
Sequencing  
This clone is registered to be sequenced, but has not been successfully mapped to any chromosome.

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Sequencing Project
Chromosome unmapped
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Wellcome Trust Sanger Institute
Full Sequence
96,752 bp
C00HBa0182E16.1
CU457732.5 (GenBank) 		[View]
[Download fasta]
[Download full submission] (0.06 MB)
End Sequences
Warnings
none
FTP
Unmapped Clones Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (18)
2133, 2179, 2212, 2282, 2430, 2993, 3135, 3247, 3889, 4138, 4292, 4787, 5054, 5436, 6398, 6902, 10240, 10864
HindIII in silico (21)
1180, 1948, 2129, 2248, 2296, 2454, 2986, 3133, 3137, 3242, 3941, 4143, 4282, 4655, 4856, 5184, 6241, 6311, 6825, 10104, 10661
Fragment Lengths Match Score
0.91
Annotations  
Browse
LE_HBa0182E16 has no browsable sequence annotations
Download
 
User comments [Add comment] 
Posted by Helen Beasley (sequencer) on 2008-04-10 06:41:17   
BAC sequenced by Chromosome 4 sequencing project (overgo for marker T0688). Marker not found in sequence. BAC not on Chromosome 4 from FISH analysis performed at Wageningen University (single focus in euchromatin).
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 More Criteria

Seq. Center Reported Status
Estimated Length
 and  bp
GenBank Accession (version insensitive)
e.g. AP009318.1 or AP009318
Sequencing on Chromosome
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Annotations
End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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