Clone hba-190n21

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Clone
Clone name
hba-190n21
LE_HBa0190N21
C02HBa0190N21
P190N21
Clone type
BAC
Contamination
none
Estimated length
95,073
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg5497 : [coherent], 2 members:
C02HBa0161E16, C02HBa0190N21
Marker matches - overgo what's this? 
Plausible matches Additional Info
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
FISH mapNot on FISH map
FISH imagesNone
IL Mapping 
Assigned to project
Korea
IL-mapped to chromosome
-
IL-mapped to IL segment
2-E
IL mapping notes
-
Sequencing  
This clone is being sequenced by the Chromosome 2 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 2
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Korea Research Institute of Bioscience and Biotechnology
Full Sequence
144,100 bp
C02HBa0190N21.3
AC215414.2 (GenBank)
[View]
[Download fasta]
[Download full submission] (160.66 MB)
End Sequences
Warnings
  • sequence length 144,100 is 51.6% different from estimated length 95,073
FTP
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (19)
1912, 2270, 2576, 2619, 2740, 3417, 3417, 3622, 3622, 5026, 5277, 5369, 5810, 5955, 6339, 6789, 7615, 8079, 12619
HindIII in silico (36)
1085, 1161, 1213, 1418, 1632, 1748, 1825, 1862, 1877, 1900, 1922, 1982, 2281, 2547, 2609, 2625, 2736, 3357, 3442, 3448, 3637, 3643, 3648, 3772, 4860, 5006, 5071, 5474, 5580, 5634, 6131, 6170, 6678, 6794, 7935, 12347
Fragment Lengths Match Score
0.73
Annotations  
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LE_HBa0190N21 has no browsable sequence annotations
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