Clone hba-178o2

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Clone
Clone name
hba-178o2
LE_HBa0178O02
P178O02
Clone type
BAC
Contamination
none
Estimated length
124,599
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this? 
Plausible matches Additional Info
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
FISH map 
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
373-02 1CompositeFluorescencePhase87.8%
350-11 1CompositeFluorescencePhase86.9%
373-16 1CompositeFluorescencePhase87.8%
350-21a 1CompositeFluorescencePhase88.9%
350-21b 1CompositeFluorescencePhase88.0%
350-26 1CompositeFluorescencePhase88.8%
373-28 1CompositeFluorescencePhase88.5%
373-29 1CompositeFluorescencePhase90.0%
373-30 1CompositeFluorescencePhase90.9%
350-36 1CompositeFluorescencePhase87.0%
373-36 1CompositeFluorescencePhase89.5%
350-37 1CompositeFluorescencePhase90.7%
373-38 1CompositeFluorescencePhase90.1%
350-39 1CompositeFluorescencePhase89.0%
350-41 1CompositeFluorescencePhase89.7%
373-41 1CompositeFluorescencePhase89.2%
350-42 1CompositeFluorescencePhase86.3%
350-43 1CompositeFluorescencePhase90.0%
350-44 1CompositeFluorescencePhase88.2%
350-45 1CompositeFluorescencePhase87.0%
Mean±sd88.7%±1.3%

Given an estimated length of 10.8µm for chromosome 7Q and the mean percentage above, this BAC is approximately 9.6µm±0.1µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is not assigned to any sequencing project.
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Sequencing Project
none
HTGS phase
none
Sequencing Status
none
Sequencing Organization
not recorded
Full Sequence
Sequence not available.
End Sequences
Warnings
none
FTP
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (29)
1560, 1724, 1859, 1990, 2093, 2190, 2521, 2653, 2653, 2775, 3157, 3216, 3216, 3350, 3590, 4289, 4373, 4828, 5352, 5352, 5547, 5902, 6040, 6040, 6516, 7400, 7400, 7782, 9231
Annotations  
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LE_HBa0178O02 has no browsable sequence annotations
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