Clone hba-157f14

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Clone
Clone name
hba-157f14
LE_HBa0157F14
P157F14
Clone type
BAC
Contamination
none
Estimated length
102,681
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg3898 : [coherent], 3 members:
LE_HBa0157F14, LE_HBa0254G02, LE_HBa0323F05
Marker matches - overgo what's this? 
Plausible matches Additional Info
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
FISH map 
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
313-02 1CompositeFluorescencePhase66.6%
313-08 1CompositeFluorescencePhase63.5%
313-11 1CompositeFluorescencePhase62.7%
313-13 1CompositeFluorescencePhase61.8%
313-15 1CompositeFluorescencePhase62.2%
313-17a 1CompositeFluorescencePhase64.4%
313-17b 1CompositeFluorescencePhase63.4%
313-24 1CompositeFluorescencePhase61.9%
313-25 1CompositeFluorescencePhase64.1%
313-28 1CompositeFluorescencePhase64.2%
313-35 1CompositeFluorescencePhase63.9%
Mean±sd63.5%±1.4%

Given an estimated length of 7.4µm for chromosome 5P and the mean percentage above, this BAC is approximately 4.7µm±0.1µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is not assigned to any sequencing project.
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Sequencing Project
none
HTGS phase
none
Sequencing Status
none
Sequencing Organization
not recorded
Full Sequence
Sequence not available.
End Sequences
Warnings
none
FTP
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (26)
1292, 1397, 1522, 1638, 1749, 1976, 2092, 2220, 2320, 2733, 2733, 2909, 2909, 3534, 3776, 4139, 4597, 5013, 5517, 5966, 5966, 6061, 6600, 6600, 6779, 10643
Annotations  
Browse
LE_HBa0157F14 has no browsable sequence annotations
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